Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 AC012317.2-201ENST00000623305 2251 ntBASIC17.1■□□□□ 0.33
VMP1Q96GC9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 AL139384.1-201ENST00000612143 3047 ntBASIC17.1■□□□□ 0.33
VMP1Q96GC9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 AL645929.1-201ENST00000420084 975 ntBASIC17.1■□□□□ 0.33
VMP1Q96GC9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 SPDYE13P-201ENST00000445314 798 ntBASIC17.1■□□□□ 0.33
VMP1Q96GC9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 AC134043.2-201ENST00000624206 2238 ntBASIC17.1■□□□□ 0.33
VMP1Q96GC9 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 AC009102.3-201ENST00000623118 1491 ntBASIC17.1■□□□□ 0.33
VMP1Q96GC9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VMP1Q96GC9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VMP1Q96GC9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 AC116407.4-201ENST00000623319 1061 ntBASIC17.09■□□□□ 0.33
VMP1Q96GC9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VMP1Q96GC9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VMP1Q96GC9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VMP1Q96GC9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VMP1Q96GC9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VMP1Q96GC9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
VMP1Q96GC9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VMP1Q96GC9 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.08■□□□□ 0.33
VMP1Q96GC9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.08■□□□□ 0.33
VMP1Q96GC9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
VMP1Q96GC9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VMP1Q96GC9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VMP1Q96GC9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VMP1Q96GC9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VMP1Q96GC9 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VMP1Q96GC9 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VMP1Q96GC9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VMP1Q96GC9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.08■□□□□ 0.32
VMP1Q96GC9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms