Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.97■□□□□ 0.95
BRF1Q92994 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
BRF1Q92994 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 AL590326.2-201ENST00000625139 305 ntBASIC20.97■□□□□ 0.95
BRF1Q92994 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.97■□□□□ 0.95
BRF1Q92994 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BRF1Q92994 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BRF1Q92994 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRF1Q92994 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.97■□□□□ 0.95
BRF1Q92994 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
BRF1Q92994 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
BRF1Q92994 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
BRF1Q92994 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.96■□□□□ 0.95
BRF1Q92994 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.96■□□□□ 0.95
BRF1Q92994 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.96■□□□□ 0.95
BRF1Q92994 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.96■□□□□ 0.95
BRF1Q92994 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.96■□□□□ 0.95
BRF1Q92994 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.96■□□□□ 0.95
BRF1Q92994 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.96■□□□□ 0.95
BRF1Q92994 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 LINC00304-203ENST00000565008 1864 ntBASIC20.96■□□□□ 0.95
BRF1Q92994 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRF1Q92994 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.95■□□□□ 0.94
BRF1Q92994 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.95■□□□□ 0.94
BRF1Q92994 DDX43P3-201ENST00000441064 443 ntBASIC20.95■□□□□ 0.94
BRF1Q92994 RN7SL606P-201ENST00000472779 293 ntBASIC20.95■□□□□ 0.94
BRF1Q92994 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.95■□□□□ 0.94
BRF1Q92994 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.95■□□□□ 0.94
BRF1Q92994 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.95■□□□□ 0.94
BRF1Q92994 AC087388.1-201ENST00000571370 1112 ntBASIC20.95■□□□□ 0.94
BRF1Q92994 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.95■□□□□ 0.94
BRF1Q92994 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
BRF1Q92994 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
BRF1Q92994 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRF1Q92994 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.95■□□□□ 0.94
BRF1Q92994 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.95■□□□□ 0.94
BRF1Q92994 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
BRF1Q92994 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.94■□□□□ 0.94
BRF1Q92994 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.94■□□□□ 0.94
BRF1Q92994 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.94■□□□□ 0.94
BRF1Q92994 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.94■□□□□ 0.94
BRF1Q92994 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 AL592071.1-201ENST00000611956 408 ntBASIC20.94■□□□□ 0.94
BRF1Q92994 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
BRF1Q92994 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
BRF1Q92994 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.94■□□□□ 0.94
BRF1Q92994 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.94■□□□□ 0.94
BRF1Q92994 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.94■□□□□ 0.94
BRF1Q92994 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.94■□□□□ 0.94
BRF1Q92994 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRF1Q92994 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
BRF1Q92994 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
BRF1Q92994 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.93■□□□□ 0.94
BRF1Q92994 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms