Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TBC1D10B-205ENST00000478158 4614 ntTSL 212.86□□□□□ -0.352e-7■■□□□ 12.9
UPF1Q92900 SETD5-203ENST00000402198 6827 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.774e-12■■□□□ 12.9
UPF1Q92900 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC9.35□□□□□ -0.914e-12■■□□□ 12.9
UPF1Q92900 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.974e-12■■□□□ 12.9
UPF1Q92900 SETD5-202ENST00000399686 3362 ntTSL 57.75□□□□□ -1.174e-12■■□□□ 12.9
UPF1Q92900 RNF10-219ENST00000543675 583 ntTSL 324.26■■□□□ 1.472e-6■■□□□ 12.9
UPF1Q92900 RNF10-209ENST00000537740 412 ntTSL 216.53■□□□□ 0.242e-6■■□□□ 12.9
UPF1Q92900 RNF10-215ENST00000542207 548 ntTSL 410.82□□□□□ -0.682e-6■■□□□ 12.9
UPF1Q92900 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.162e-6■■□□□ 12.9
UPF1Q92900 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.022e-6■■□□□ 12.9
UPF1Q92900 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.515e-9■■□□□ 12.9
UPF1Q92900 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.955e-9■■□□□ 12.9
UPF1Q92900 RAD23A-210ENST00000593114 1691 ntTSL 520.93■□□□□ 0.945e-9■■□□□ 12.9
UPF1Q92900 RAD23A-206ENST00000590881 999 ntTSL 518.4■□□□□ 0.545e-9■■□□□ 12.9
UPF1Q92900 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.89■□□□□ 0.295e-9■■□□□ 12.9
UPF1Q92900 ATP7B-212ENST00000634519 727 ntTSL 319.41■□□□□ 0.72e-7■■□□□ 12.9
UPF1Q92900 LIMD2-208ENST00000579814 709 ntTSL 236.91■■■■□ 3.52e-6■■□□□ 12.9
UPF1Q92900 LIMD2-207ENST00000579329 920 ntTSL 1 (best)34.18■■■■□ 3.062e-6■■□□□ 12.9
UPF1Q92900 LIMD2-204ENST00000578297 760 ntTSL 231.86■■■□□ 2.692e-6■■□□□ 12.9
UPF1Q92900 LIMD2-203ENST00000578067 2019 ntTSL 1 (best)31.12■■■□□ 2.572e-6■■□□□ 12.9
UPF1Q92900 LIMD2-209ENST00000580222 846 ntTSL 330.49■■■□□ 2.472e-6■■□□□ 12.9
UPF1Q92900 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC29.38■■■□□ 2.292e-6■■□□□ 12.9
UPF1Q92900 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.272e-6■■□□□ 12.9
UPF1Q92900 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.132e-6■■□□□ 12.9
UPF1Q92900 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC24.66■■□□□ 1.542e-6■■□□□ 12.9
UPF1Q92900 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC18.81■□□□□ 0.62e-6■■□□□ 12.9
UPF1Q92900 STRADA-251ENST00000640870 1687 ntTSL 517.84■□□□□ 0.452e-6■■□□□ 12.9
UPF1Q92900 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.122e-6■■□□□ 12.9
UPF1Q92900 FADS2-215ENST00000574708 385 ntTSL 3 BASIC22.42■■□□□ 1.181e-7■■□□□ 12.9
UPF1Q92900 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.441e-7■■□□□ 12.9
UPF1Q92900 FEN1-202ENST00000535307 768 ntTSL 216.93■□□□□ 0.31e-7■■□□□ 12.9
UPF1Q92900 BPNT1-202ENST00000354807 1152 ntTSL 5 BASIC13.66□□□□□ -0.223e-8■■□□□ 12.9
UPF1Q92900 BPNT1-210ENST00000544404 2379 ntTSL 2 BASIC12.05□□□□□ -0.483e-8■■□□□ 12.9
UPF1Q92900 BPNT1-201ENST00000322067 2465 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.73e-8■■□□□ 12.9
UPF1Q92900 BPNT1-203ENST00000414869 2357 ntTSL 2 BASIC10.38□□□□□ -0.753e-8■■□□□ 12.9
UPF1Q92900 BPNT1-205ENST00000469520 2737 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.783e-8■■□□□ 12.9
UPF1Q92900 NDUFB5-202ENST00000359944 1054 ntTSL 1 (best)21.92■■□□□ 1.11e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.58■□□□□ 0.891e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-203ENST00000468210 824 ntTSL 220.39■□□□□ 0.851e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-209ENST00000480374 729 ntTSL 316.69■□□□□ 0.261e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-205ENST00000472629 744 ntTSL 3 BASIC16.16■□□□□ 0.181e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-201ENST00000259037 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.031e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-207ENST00000476587 635 ntTSL 213.31□□□□□ -0.281e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-204ENST00000471112 684 ntTSL 312.91□□□□□ -0.341e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-206ENST00000473500 689 ntTSL 312.04□□□□□ -0.481e-11■■□□□ 12.9
UPF1Q92900 NDUFB5-214ENST00000493866 4046 ntTSL 1 (best) BASIC10.05□□□□□ -0.81e-11■■□□□ 12.9
UPF1Q92900 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.341e-8■■□□□ 12.9
UPF1Q92900 HDHD2-205ENST00000588183 2224 ntTSL 1 (best)18.03■□□□□ 0.482e-6■■□□□ 12.9
UPF1Q92900 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.282e-6■■□□□ 12.9
UPF1Q92900 HDHD2-206ENST00000588861 3229 nt8.92□□□□□ -0.982e-6■■□□□ 12.9
UPF1Q92900 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.561e-7■■□□□ 12.9
UPF1Q92900 PEBP1-202ENST00000542939 708 ntTSL 322.57■■□□□ 1.23e-15■■□□□ 12.9
UPF1Q92900 RETREG2-201ENST00000273048 2533 ntTSL 1 (best)23.43■■□□□ 1.344e-7■■□□□ 12.9
UPF1Q92900 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.714e-7■■□□□ 12.9
UPF1Q92900 RETREG2-202ENST00000420189 1781 ntTSL 1 (best)16.77■□□□□ 0.284e-7■■□□□ 12.9
UPF1Q92900 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC18.47■□□□□ 0.555e-8■■□□□ 12.9
UPF1Q92900 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC17.1■□□□□ 0.335e-8■■□□□ 12.9
UPF1Q92900 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.255e-8■■□□□ 12.9
UPF1Q92900 GFI1B-201ENST00000339463 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.515e-8■■□□□ 12.9
UPF1Q92900 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.92■□□□□ 0.782e-6■■□□□ 12.9
UPF1Q92900 AC012254.2-201ENST00000602459 1443 ntAPPRIS ALT2 TSL 519.32■□□□□ 0.681e-6■■□□□ 12.9
UPF1Q92900 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC30.7■■■□□ 2.511e-11■■□□□ 12.9
UPF1Q92900 BRD2-216ENST00000581002 550 ntTSL 429.26■■■□□ 2.271e-11■■□□□ 12.9
UPF1Q92900 BRD2-217ENST00000584808 547 ntTSL 429.26■■■□□ 2.271e-11■■□□□ 12.9
UPF1Q92900 BRD2-215ENST00000580234 718 ntTSL 425.49■■□□□ 1.671e-11■■□□□ 12.9
UPF1Q92900 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC21.59■■□□□ 1.058e-7■■□□□ 12.9
UPF1Q92900 LGALS3BP-210ENST00000588508 882 ntTSL 221.45■■□□□ 1.028e-7■■□□□ 12.9
UPF1Q92900 LGALS3BP-211ENST00000588587 1020 ntTSL 519.95■□□□□ 0.788e-7■■□□□ 12.9
UPF1Q92900 LGALS3BP-208ENST00000588198 1132 ntTSL 219.42■□□□□ 0.78e-7■■□□□ 12.9
UPF1Q92900 LGALS3BP-214ENST00000589527 818 ntTSL 319.2■□□□□ 0.668e-7■■□□□ 12.9
UPF1Q92900 LGALS3BP-219ENST00000592255 556 ntTSL 217.63■□□□□ 0.418e-7■■□□□ 12.9
UPF1Q92900 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.086e-8■■□□□ 12.9
UPF1Q92900 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.92□□□□□ -0.022e-11■■□□□ 12.9
UPF1Q92900 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.552e-11■■□□□ 12.9
UPF1Q92900 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC9.38□□□□□ -0.912e-11■■□□□ 12.9
UPF1Q92900 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.012e-11■■□□□ 12.9
UPF1Q92900 MKNK1-202ENST00000342571 2422 ntTSL 1 (best)17.6■□□□□ 0.417e-8■■□□□ 12.9
UPF1Q92900 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.53■□□□□ 0.087e-8■■□□□ 12.9
UPF1Q92900 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC15.28■□□□□ 0.047e-8■■□□□ 12.9
UPF1Q92900 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.047e-8■■□□□ 12.9
UPF1Q92900 COPZ1-211ENST00000551412 548 ntTSL 213.63□□□□□ -0.237e-13■■□□□ 12.8
UPF1Q92900 COPZ1-210ENST00000550713 548 ntTSL 212.5□□□□□ -0.417e-13■■□□□ 12.8
UPF1Q92900 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.683e-6■■□□□ 12.8
UPF1Q92900 FAM192A-213ENST00000566403 1396 ntTSL 512.56□□□□□ -0.43e-6■■□□□ 12.8
UPF1Q92900 FAM192A-202ENST00000389447 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.443e-6■■□□□ 12.8
UPF1Q92900 CORO7-232ENST00000576637 730 ntTSL 322.4■■□□□ 1.181e-6■■□□□ 12.8
UPF1Q92900 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.53□□□□□ -0.081e-6■■□□□ 12.8
UPF1Q92900 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC22.28■■□□□ 1.161e-6■■□□□ 12.8
UPF1Q92900 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.891e-6■■□□□ 12.8
UPF1Q92900 MCU-211ENST00000605597 3224 ntTSL 212.02□□□□□ -0.491e-6■■□□□ 12.8
UPF1Q92900 MCU-204ENST00000536019 3224 ntTSL 2 BASIC12.02□□□□□ -0.491e-6■■□□□ 12.8
UPF1Q92900 MCU-210ENST00000605416 2288 ntTSL 27.9□□□□□ -1.141e-6■■□□□ 12.8
UPF1Q92900 JMJD8-214ENST00000569441 1428 ntTSL 540.88■■■■■ 4.138e-6■■□□□ 12.8
UPF1Q92900 JMJD8-212ENST00000568689 1998 ntTSL 334.85■■■■□ 3.178e-6■■□□□ 12.8
UPF1Q92900 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.888e-6■■□□□ 12.8
UPF1Q92900 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.648e-6■■□□□ 12.8
UPF1Q92900 JMJD8-209ENST00000567120 2205 ntTSL 1 (best)29.49■■■□□ 2.318e-6■■□□□ 12.8
UPF1Q92900 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.28e-6■■□□□ 12.8
UPF1Q92900 CCDC43-204ENST00000588687 721 ntTSL 227.9■■■□□ 2.068e-6■■□□□ 12.8
UPF1Q92900 JMJD8-204ENST00000563088 1067 ntTSL 327.46■■□□□ 1.998e-6■■□□□ 12.8
Retrieved 100 of 15,879 protein–RNA pairs in 108.3 ms