RNA–Protein interactions for RNA: ENST00000273048.2

RETREG2-201, Transcript of reticulophagy regulator family member 2, humanhuman

TSL 1 (best)

Gene RETREG2, Length 2,533 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2-201ENST00000273048 NISCHQ9Y2I1 1504 aa47.72■■■■■ 5.23
RETREG2-201ENST00000273048 SHROOM4Q9ULL8 1493 aa41.33■■■■■ 4.21
RETREG2-201ENST00000273048 SUPT5HO00267 1087 aaKnown RBP40.79■■■■■ 4.12
RETREG2-201ENST00000273048 CCDC180Q9P1Z9 1646 aa40.64■■■■■ 4.1
RETREG2-201ENST00000273048 ZCCHC6Q5VYS8 1495 aaKnown RBP40.34■■■■■ 4.05
RETREG2-201ENST00000273048 MYO15BQ96JP2 1530 aa39.92■■■■□ 3.98
RETREG2-201ENST00000273048 CHIC1Q5VXU3 224 aa39.84■■■■□ 3.97
RETREG2-201ENST00000273048 DCAF8L2P0C7V8 631 aa39.71■■■■□ 3.95
RETREG2-201ENST00000273048 HRCP23327 699 aa39.65■■■■□ 3.94
RETREG2-201ENST00000273048 PCGF6Q9BYE7 350 aa39.34■■■■□ 3.89
RETREG2-201ENST00000273048 DCAF1Q9Y4B6 1507 aa39.07■■■■□ 3.85
RETREG2-201ENST00000273048 PPARGC1BQ86YN6 1023 aaKnown RBP38.93■■■■□ 3.82
RETREG2-201ENST00000273048 LOC105371045A0A1W2PR82 267 aa38.83■■■■□ 3.81
RETREG2-201ENST00000273048 TRIM26Q12899 539 aaPredicted RBP38.3■■■■□ 3.72
RETREG2-201ENST00000273048 ABCC9O60706 1549 aa38.19■■■■□ 3.7
RETREG2-201ENST00000273048 SCRIBQ14160 1630 aa38.18■■■■□ 3.7
RETREG2-201ENST00000273048 RSF1Q96T23 1441 aaPredicted RBP37.95■■■■□ 3.67
RETREG2-201ENST00000273048 TRIM41Q8WV44 630 aa37.83■■■■□ 3.65
RETREG2-201ENST00000273048 FAM9AQ8IZU1 332 aaPredicted RBP37.72■■■■□ 3.63
RETREG2-201ENST00000273048 RB1CC1Q8TDY2 1594 aa37.7■■■■□ 3.63
RETREG2-201ENST00000273048 ZEB1P37275 1124 aaPredicted RBP37.62■■■■□ 3.61
RETREG2-201ENST00000273048 NACADO15069 1562 aa37.6■■■■□ 3.61
RETREG2-201ENST00000273048 EHMT2Q96KQ7 1210 aa37.52■■■■□ 3.6
RETREG2-201ENST00000273048 CECR2Q9BXF3 1484 aa37.3■■■■□ 3.56
RETREG2-201ENST00000273048 MROH2BQ7Z745 1585 aa37.14■■■■□ 3.54
RETREG2-201ENST00000273048 SCAF1Q9H7N4 1312 aaKnown RBP37.01■■■■□ 3.52
RETREG2-201ENST00000273048 WIZO95785 1651 aa36.96■■■■□ 3.51
RETREG2-201ENST00000273048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.81■■■■□ 3.48
RETREG2-201ENST00000273048 PELP1Q8IZL8 1130 aaKnown RBP36.72■■■■□ 3.47
RETREG2-201ENST00000273048 CCER1Q8TC90 406 aaPredicted RBP36.67■■■■□ 3.46
RETREG2-201ENST00000273048 BAZ1AQ9NRL2 1556 aaPredicted RBP36.65■■■■□ 3.46
RETREG2-201ENST00000273048 EIF4G1Q04637 1599 aaKnown RBP36.62■■■■□ 3.45
RETREG2-201ENST00000273048 UNC13AQ9UPW8 1703 aa36.62■■■■□ 3.45
RETREG2-201ENST00000273048 TTBK1Q5TCY1 1321 aaPredicted RBP36.46■■■■□ 3.43
RETREG2-201ENST00000273048 ABCC8Q09428 1581 aa36.42■■■■□ 3.42
RETREG2-201ENST00000273048 SMARCA4P51532 1647 aa36.41■■■■□ 3.42
RETREG2-201ENST00000273048 ACIN1Q9UKV3 1341 aaKnown RBP36.37■■■■□ 3.41
RETREG2-201ENST00000273048 CCDC88BA6NC98 1476 aa36.37■■■■□ 3.41
RETREG2-201ENST00000273048 NEUROD1Q13562 356 aa36.35■■■■□ 3.41
RETREG2-201ENST00000273048 TOP2AP11388 1531 aaKnown RBP36.3■■■■□ 3.4
RETREG2-201ENST00000273048 DIEXFQ68CQ4 756 aaKnown RBP36.28■■■■□ 3.4
RETREG2-201ENST00000273048 WRNQ14191 1432 aaPredicted RBP eCLIP36.27■■■■□ 3.4
RETREG2-201ENST00000273048 CEP162Q5TB80 1403 aa36.26■■■■□ 3.39
RETREG2-201ENST00000273048 PABPN1Q86U42 306 aaKnown RBP eCLIP36.25■■■■□ 3.39
RETREG2-201ENST00000273048 SOGA1O94964 1423 aa36.19■■■■□ 3.38
RETREG2-201ENST00000273048 SMARCA2P51531 1590 aa36.13■■■■□ 3.37
RETREG2-201ENST00000273048 BICRAQ9NZM4 1560 aa36.12■■■■□ 3.37
RETREG2-201ENST00000273048 TNIKQ9UKE5 1360 aa36.08■■■■□ 3.37
RETREG2-201ENST00000273048 GTF3C3Q9Y5Q9 886 aa36.04■■■■□ 3.36
RETREG2-201ENST00000273048 RUSC2Q8N2Y8 1516 aa36.02■■■■□ 3.36
RETREG2-201ENST00000273048 CENPBP07199 599 aaPredicted RBP36■■■■□ 3.35
RETREG2-201ENST00000273048 UBTFP17480 764 aaKnown RBP35.99■■■■□ 3.35
RETREG2-201ENST00000273048 CSRNP3Q8WYN3 585 aa35.98■■■■□ 3.35
RETREG2-201ENST00000273048 EEA1Q15075 1411 aa35.86■■■■□ 3.33
RETREG2-201ENST00000273048 ZNF316A6NFI3 1004 aaPredicted RBP35.81■■■■□ 3.32
RETREG2-201ENST00000273048 GOLGA3Q08378 1498 aa35.77■■■■□ 3.32
RETREG2-201ENST00000273048 PEG3Q9GZU2 1588 aa35.66■■■■□ 3.3
RETREG2-201ENST00000273048 HNRNPUL2Q1KMD3 747 aaKnown RBP35.62■■■■□ 3.29
RETREG2-201ENST00000273048 YTHDC1Q96MU7 727 aaKnown RBP35.6■■■■□ 3.29
RETREG2-201ENST00000273048 ATAD2BQ9ULI0 1458 aa35.5■■■■□ 3.27
RETREG2-201ENST00000273048 CEP164Q9UPV0 1460 aa35.48■■■■□ 3.27
RETREG2-201ENST00000273048 MIER1Q8N108 512 aa35.47■■■■□ 3.27
RETREG2-201ENST00000273048 SYNJ1O43426 1573 aa35.46■■■■□ 3.27
RETREG2-201ENST00000273048 CLIP1P30622 1438 aa35.44■■■■□ 3.26
RETREG2-201ENST00000273048 BAZ1BQ9UIG0 1483 aaKnown RBP35.41■■■■□ 3.26
RETREG2-201ENST00000273048 KIF21BO75037 1637 aa35.4■■■■□ 3.26
RETREG2-201ENST00000273048 VPS8Q8N3P4 1428 aa35.33■■■■□ 3.25
RETREG2-201ENST00000273048 RANGAP1P46060 587 aaPredicted RBP35.3■■■■□ 3.24
RETREG2-201ENST00000273048 RAPGEF2Q9Y4G8 1499 aa35.25■■■■□ 3.23
RETREG2-201ENST00000273048 APLP2Q06481 763 aa35.25■■■■□ 3.23
RETREG2-201ENST00000273048 MYT1Q01538 1121 aa34.94■■■■□ 3.18
RETREG2-201ENST00000273048 DHX57Q6P158 1386 aaKnown RBP34.89■■■■□ 3.18
RETREG2-201ENST00000273048 TOP2BQ02880 1626 aa34.87■■■■□ 3.17
RETREG2-201ENST00000273048 KANK4Q5T7N3 995 aaPredicted RBP34.82■■■■□ 3.16
RETREG2-201ENST00000273048 NCAPD3P42695 1498 aa34.8■■■■□ 3.16
RETREG2-201ENST00000273048 ARAP1Q96P48 1450 aa34.8■■■■□ 3.16
RETREG2-201ENST00000273048 HMGXB3Q12766 1538 aa34.8■■■■□ 3.16
RETREG2-201ENST00000273048 CLSPNQ9HAW4 1339 aa34.8■■■■□ 3.16
RETREG2-201ENST00000273048 PRXQ9BXM0 1461 aa34.73■■■■□ 3.15
RETREG2-201ENST00000273048 BIVM-ERCC5R4GMW8 1640 aa34.71■■■■□ 3.15
RETREG2-201ENST00000273048 ERICH3Q5RHP9 1530 aa34.71■■■■□ 3.15
RETREG2-201ENST00000273048 CUX1P39880 1505 aa34.58■■■■□ 3.13
RETREG2-201ENST00000273048 RRBP1Q9P2E9 1410 aaKnown RBP34.58■■■■□ 3.13
RETREG2-201ENST00000273048 SUPT16HQ9Y5B9 1047 aaKnown RBP34.54■■■■□ 3.12
RETREG2-201ENST00000273048 CFTRP13569 1480 aa34.5■■■■□ 3.11
RETREG2-201ENST00000273048 ITGAEP38570 1179 aa34.49■■■■□ 3.11
RETREG2-201ENST00000273048 CCNB3Q8WWL7 1395 aa34.45■■■■□ 3.11
RETREG2-201ENST00000273048 KIF27Q86VH2 1401 aa34.43■■■■□ 3.1
RETREG2-201ENST00000273048 CUX2O14529 1486 aa34.43■■■■□ 3.1
RETREG2-201ENST00000273048 ARHGAP35Q9NRY4 1499 aa34.39■■■■□ 3.1
RETREG2-201ENST00000273048 KCNH8Q96L42 1107 aa34.29■■■■□ 3.08
RETREG2-201ENST00000273048 RAB3GAP2Q9H2M9 1393 aa34.27■■■■□ 3.08
RETREG2-201ENST00000273048 PRDM2Q13029 1718 aa34.24■■■■□ 3.07
RETREG2-201ENST00000273048 MAPKBP1O60336 1514 aa34.21■■■■□ 3.07
RETREG2-201ENST00000273048 CADPSQ9ULU8 1353 aa34.15■■■■□ 3.06
RETREG2-201ENST00000273048 TSHZ2Q9NRE2 1034 aa34.13■■■■□ 3.05
RETREG2-201ENST00000273048 CC2D2AQ9P2K1 1620 aa34.12■■■■□ 3.05
RETREG2-201ENST00000273048 TIAM1Q13009 1591 aa34.09■■■■□ 3.05
RETREG2-201ENST00000273048 IGF1RP08069 1367 aa34.05■■■■□ 3.04
RETREG2-201ENST00000273048 SETD5Q9C0A6 1442 aa34.05■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms