Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 UPF3AP3-201ENST00000420996 769 ntBASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 AL591424.1-201ENST00000442569 1213 ntBASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 AC093677.2-201ENST00000600169 1863 ntBASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
HDDC3Q8N4P3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HDDC3Q8N4P3 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 RPS2P1-201ENST00000434010 821 ntBASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 AC145285.3-201ENST00000564603 959 ntBASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 NKAPP1-205ENST00000585790 367 ntBASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 AL139288.1-201ENST00000623748 933 ntBASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 AP000867.4-201ENST00000641616 219 ntBASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HDDC3Q8N4P3 AC135776.1-201ENST00000319817 2481 ntBASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 PGAM5P1-201ENST00000518923 814 ntBASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 AL356488.2-201ENST00000602755 427 ntBASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 AC140113.2-201ENST00000604370 208 ntBASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 HLA-J-201ENST00000462773 1622 ntBASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDDC3Q8N4P3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms