Protein–RNA interactions for Protein: P83916

CBX1, Chromobox protein homolog 1, humanhuman

Predictions only

Length 185 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P83916 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CBX1P83916 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 AL136162.1-201ENST00000607711 1078 ntBASIC18.65■□□□□ 0.58
CBX1P83916 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.65■□□□□ 0.58
CBX1P83916 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CBX1P83916 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.65■□□□□ 0.58
CBX1P83916 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.65■□□□□ 0.58
CBX1P83916 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 AL357033.4-201ENST00000617703 1807 ntBASIC18.65■□□□□ 0.58
CBX1P83916 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.65■□□□□ 0.58
CBX1P83916 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CBX1P83916 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CBX1P83916 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX1P83916 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CBX1P83916 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CBX1P83916 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.64■□□□□ 0.57
CBX1P83916 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CBX1P83916 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 TNRC18P2-201ENST00000417666 2714 ntBASIC18.64■□□□□ 0.57
CBX1P83916 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 AC079140.4-201ENST00000507448 529 ntBASIC18.64■□□□□ 0.57
CBX1P83916 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CBX1P83916 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.57
CBX1P83916 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.64■□□□□ 0.57
CBX1P83916 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.64■□□□□ 0.57
CBX1P83916 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX1P83916 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CBX1P83916 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CBX1P83916 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 AC023632.3-201ENST00000521633 145 ntBASIC18.63■□□□□ 0.57
CBX1P83916 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.63■□□□□ 0.57
CBX1P83916 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 MYLKP1-201ENST00000509077 1580 ntBASIC18.63■□□□□ 0.57
CBX1P83916 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.63■□□□□ 0.57
CBX1P83916 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CBX1P83916 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 AL136116.3-201ENST00000402907 1138 ntBASIC18.62■□□□□ 0.57
CBX1P83916 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.62■□□□□ 0.57
CBX1P83916 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.62■□□□□ 0.57
CBX1P83916 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CBX1P83916 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CBX1P83916 TPRG1LP1-201ENST00000598702 760 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms