Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A4P53420 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A4P53420 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A4P53420 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A4P53420 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A4P53420 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A4P53420 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A4P53420 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A4P53420 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.91■□□□□ 0.62
COL4A4P53420 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.91■□□□□ 0.62
COL4A4P53420 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.91■□□□□ 0.62
COL4A4P53420 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A4P53420 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A4P53420 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A4P53420 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A4P53420 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
COL4A4P53420 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A4P53420 AC135776.1-201ENST00000319817 2481 ntBASIC18.9■□□□□ 0.62
COL4A4P53420 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.9■□□□□ 0.62
COL4A4P53420 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.9■□□□□ 0.62
COL4A4P53420 HLA-J-202ENST00000469281 1241 ntBASIC18.9■□□□□ 0.62
COL4A4P53420 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.9■□□□□ 0.62
COL4A4P53420 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.9■□□□□ 0.62
COL4A4P53420 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL4A4P53420 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A4P53420 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A4P53420 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
COL4A4P53420 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.89■□□□□ 0.62
COL4A4P53420 AL096828.2-201ENST00000567259 1965 ntBASIC18.89■□□□□ 0.62
COL4A4P53420 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL4A4P53420 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL4A4P53420 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A4P53420 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.89■□□□□ 0.61
COL4A4P53420 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.89■□□□□ 0.61
COL4A4P53420 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.89■□□□□ 0.61
COL4A4P53420 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A4P53420 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.89■□□□□ 0.61
COL4A4P53420 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms