Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 REXO1L11P-201ENST00000620964 1927 ntBASIC21.64■■□□□ 1.05
COL4A1P02462 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL4A1P02462 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.64■■□□□ 1.05
COL4A1P02462 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A1P02462 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL4A1P02462 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A1P02462 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A1P02462 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A1P02462 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
COL4A1P02462 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A1P02462 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A1P02462 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A1P02462 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A1P02462 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A1P02462 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A1P02462 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
COL4A1P02462 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A1P02462 AC009113.1-201ENST00000570267 2443 ntBASIC21.62■■□□□ 1.05
COL4A1P02462 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL4A1P02462 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL4A1P02462 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL4A1P02462 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
COL4A1P02462 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC21.62■■□□□ 1.05
COL4A1P02462 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL4A1P02462 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC21.62■■□□□ 1.05
COL4A1P02462 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC21.62■■□□□ 1.05
COL4A1P02462 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.62■■□□□ 1.05
COL4A1P02462 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.62■■□□□ 1.05
COL4A1P02462 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.62■■□□□ 1.05
COL4A1P02462 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.62■■□□□ 1.05
COL4A1P02462 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL4A1P02462 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL4A1P02462 AL353135.1-201ENST00000606729 504 ntBASIC21.62■■□□□ 1.05
COL4A1P02462 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.62■■□□□ 1.05
COL4A1P02462 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL4A1P02462 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A1P02462 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.61■■□□□ 1.05
COL4A1P02462 STK19B-204ENST00000512515 211 ntBASIC21.61■■□□□ 1.05
COL4A1P02462 AC010654.1-201ENST00000615722 808 ntBASIC21.61■■□□□ 1.05
COL4A1P02462 AC104581.1-202ENST00000635932 2618 ntBASIC21.61■■□□□ 1.05
COL4A1P02462 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC21.61■■□□□ 1.05
COL4A1P02462 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 BX276092.7-203ENST00000637198 1536 ntBASIC21.61■■□□□ 1.05
COL4A1P02462 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A1P02462 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.6■■□□□ 1.05
COL4A1P02462 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
COL4A1P02462 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.6■■□□□ 1.05
COL4A1P02462 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
COL4A1P02462 CRYGEP-201ENST00000412192 528 ntBASIC21.6■■□□□ 1.05
COL4A1P02462 METTL21AP1-201ENST00000438852 635 ntBASIC21.6■■□□□ 1.05
COL4A1P02462 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.6■■□□□ 1.05
COL4A1P02462 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.6■■□□□ 1.05
COL4A1P02462 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.6■■□□□ 1.05
COL4A1P02462 AL138781.2-201ENST00000617896 1843 ntBASIC21.6■■□□□ 1.05
COL4A1P02462 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.6■■□□□ 1.05
COL4A1P02462 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
COL4A1P02462 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A1P02462 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
COL4A1P02462 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
COL4A1P02462 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
COL4A1P02462 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC21.6■■□□□ 1.05
COL4A1P02462 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A1P02462 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.6■■□□□ 1.05
COL4A1P02462 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A1P02462 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.6■■□□□ 1.05
COL4A1P02462 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A1P02462 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A1P02462 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms