Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 AC022188.1-201ENST00000620960 1664 ntBASIC13.44□□□□□ -0.26
HLA-DQA1P01909 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 RER1-204ENST00000378518 522 ntTSL 3 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 AL160286.2-201ENST00000567150 934 ntBASIC13.43□□□□□ -0.26
HLA-DQA1P01909 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DQA1P01909 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 KRT8P3-201ENST00000519669 1449 ntBASIC13.42□□□□□ -0.26
HLA-DQA1P01909 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 AP000593.1-201ENST00000393668 712 ntBASIC13.42□□□□□ -0.26
HLA-DQA1P01909 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 AL109923.1-201ENST00000618799 583 ntBASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
HLA-DQA1P01909 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HLA-DQA1P01909 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms