Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ABCA1O95477 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA1O95477 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
ABCA1O95477 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ABCA1O95477 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA1O95477 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA1O95477 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
ABCA1O95477 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
ABCA1O95477 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.93□□□□□ -0.02
ABCA1O95477 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ABCA1O95477 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.93□□□□□ -0.02
ABCA1O95477 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
ABCA1O95477 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
ABCA1O95477 AC023274.1-201ENST00000418278 595 ntBASIC14.93□□□□□ -0.02
ABCA1O95477 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.93□□□□□ -0.02
ABCA1O95477 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
ABCA1O95477 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
ABCA1O95477 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
ABCA1O95477 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
ABCA1O95477 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
ABCA1O95477 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.93□□□□□ -0.02
ABCA1O95477 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
ABCA1O95477 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA1O95477 DNAJB3-201ENST00000446806 729 ntBASIC14.92□□□□□ -0.02
ABCA1O95477 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA1O95477 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
ABCA1O95477 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.92□□□□□ -0.02
ABCA1O95477 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.92□□□□□ -0.02
ABCA1O95477 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
ABCA1O95477 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA1O95477 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.92□□□□□ -0.02
ABCA1O95477 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ABCA1O95477 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC14.92□□□□□ -0.02
ABCA1O95477 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA1O95477 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA1O95477 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA1O95477 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA1O95477 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA1O95477 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
ABCA1O95477 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.91□□□□□ -0.02
ABCA1O95477 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
ABCA1O95477 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
ABCA1O95477 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms