Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
PROM1O43490 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 MTCL1P1-201ENST00000446207 792 ntBASIC16.94■□□□□ 0.3
PROM1O43490 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 KRT8P26-201ENST00000534154 1276 ntBASIC16.94■□□□□ 0.3
PROM1O43490 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PROM1O43490 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 AC006116.8-202ENST00000587620 1550 ntBASIC16.94■□□□□ 0.3
PROM1O43490 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 AC134043.2-201ENST00000624206 2238 ntBASIC16.93■□□□□ 0.3
PROM1O43490 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
PROM1O43490 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 PCED1CP-201ENST00000419887 785 ntBASIC16.93■□□□□ 0.3
PROM1O43490 UPK3BP1-201ENST00000428678 509 ntBASIC16.93■□□□□ 0.3
PROM1O43490 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.93■□□□□ 0.3
PROM1O43490 GUSBP12-201ENST00000513727 720 ntBASIC16.93■□□□□ 0.3
PROM1O43490 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.93■□□□□ 0.3
PROM1O43490 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.93■□□□□ 0.3
PROM1O43490 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 AC067852.2-201ENST00000590513 2313 ntBASIC16.93■□□□□ 0.3
PROM1O43490 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.93■□□□□ 0.3
PROM1O43490 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
PROM1O43490 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.93■□□□□ 0.3
PROM1O43490 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
PROM1O43490 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PROM1O43490 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PROM1O43490 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PROM1O43490 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.92■□□□□ 0.3
PROM1O43490 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 RN7SL606P-201ENST00000472779 293 ntBASIC16.92■□□□□ 0.3
PROM1O43490 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.92■□□□□ 0.3
PROM1O43490 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.92■□□□□ 0.3
PROM1O43490 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.92■□□□□ 0.3
PROM1O43490 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.92■□□□□ 0.3
PROM1O43490 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 AC012317.2-201ENST00000623305 2251 ntBASIC16.92■□□□□ 0.3
PROM1O43490 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.92■□□□□ 0.3
PROM1O43490 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
PROM1O43490 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PROM1O43490 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms