Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.22■□□□□ 0.51
CBX4O00257 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.22■□□□□ 0.51
CBX4O00257 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.22■□□□□ 0.51
CBX4O00257 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.22■□□□□ 0.51
CBX4O00257 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.22■□□□□ 0.51
CBX4O00257 AC091304.2-201ENST00000564639 760 ntBASIC18.22■□□□□ 0.51
CBX4O00257 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.22■□□□□ 0.51
CBX4O00257 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 AL031008.1-201ENST00000619963 541 ntBASIC18.22■□□□□ 0.51
CBX4O00257 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.22■□□□□ 0.51
CBX4O00257 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.22■□□□□ 0.51
CBX4O00257 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.21■□□□□ 0.51
CBX4O00257 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.21■□□□□ 0.51
CBX4O00257 AL390961.4-201ENST00000623958 2535 ntBASIC18.21■□□□□ 0.51
CBX4O00257 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 TP73-AS1-210ENST00000637775 1455 ntBASIC18.21■□□□□ 0.51
CBX4O00257 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.21■□□□□ 0.51
CBX4O00257 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 TSPY19P-201ENST00000418461 509 ntBASIC18.21■□□□□ 0.51
CBX4O00257 TSPY18P-201ENST00000441642 509 ntBASIC18.21■□□□□ 0.51
CBX4O00257 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.21■□□□□ 0.51
CBX4O00257 KRT18P31-201ENST00000506277 1292 ntBASIC18.21■□□□□ 0.51
CBX4O00257 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.21■□□□□ 0.51
CBX4O00257 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.21■□□□□ 0.51
CBX4O00257 AC009533.2-201ENST00000543664 586 ntBASIC18.21■□□□□ 0.51
CBX4O00257 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.21■□□□□ 0.51
CBX4O00257 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CBX4O00257 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CBX4O00257 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.2■□□□□ 0.5
CBX4O00257 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CBX4O00257 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.2■□□□□ 0.5
CBX4O00257 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CBX4O00257 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.2■□□□□ 0.5
CBX4O00257 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.2■□□□□ 0.5
CBX4O00257 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CBX4O00257 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.2■□□□□ 0.5
CBX4O00257 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 POM121L3P-201ENST00000419331 1163 ntBASIC18.2■□□□□ 0.5
CBX4O00257 AC079781.3-201ENST00000449110 356 ntBASIC18.2■□□□□ 0.5
CBX4O00257 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.2■□□□□ 0.5
CBX4O00257 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.2■□□□□ 0.5
CBX4O00257 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.2■□□□□ 0.5
CBX4O00257 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
CBX4O00257 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CBX4O00257 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.2■□□□□ 0.5
CBX4O00257 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CBX4O00257 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms