Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 AL031598.1-201ENST00000561511 1773 ntBASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 KRT18P31-201ENST00000506277 1292 ntBASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP3Q96DZ5 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 NSUN5P1-202ENST00000421140 1535 ntBASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 NSUN5P2-203ENST00000457352 1529 ntBASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 FAAHP1-202ENST00000446499 1238 ntBASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 AL024508.2-201ENST00000607749 1894 ntBASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP3Q96DZ5 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 AC246785.2-201ENST00000432512 513 ntBASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CLIP3Q96DZ5 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CLIP3Q96DZ5 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms