Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC135050.7-201ENST00000624508 2218 ntBASIC18.13■□□□□ 0.49
USP39Q53GS9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.13■□□□□ 0.49
USP39Q53GS9 MTCL1P1-201ENST00000446207 792 ntBASIC18.13■□□□□ 0.49
USP39Q53GS9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.13■□□□□ 0.49
USP39Q53GS9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.13■□□□□ 0.49
USP39Q53GS9 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.13■□□□□ 0.49
USP39Q53GS9 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.13■□□□□ 0.49
USP39Q53GS9 AC027601.4-201ENST00000611259 610 ntBASIC18.13■□□□□ 0.49
USP39Q53GS9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
USP39Q53GS9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.13■□□□□ 0.49
USP39Q53GS9 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.13■□□□□ 0.49
USP39Q53GS9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 AP005117.1-201ENST00000584346 1413 ntBASIC18.13■□□□□ 0.49
USP39Q53GS9 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
USP39Q53GS9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
USP39Q53GS9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.12■□□□□ 0.49
USP39Q53GS9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.12■□□□□ 0.49
USP39Q53GS9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.12■□□□□ 0.49
USP39Q53GS9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.12■□□□□ 0.49
USP39Q53GS9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.12■□□□□ 0.49
USP39Q53GS9 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.12■□□□□ 0.49
USP39Q53GS9 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.12■□□□□ 0.49
USP39Q53GS9 AC005104.2-201ENST00000427818 678 ntBASIC18.12■□□□□ 0.49
USP39Q53GS9 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
USP39Q53GS9 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
USP39Q53GS9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
USP39Q53GS9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 AC007613.1-201ENST00000572811 2597 ntBASIC18.12■□□□□ 0.49
USP39Q53GS9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 HLA-J-201ENST00000462773 1622 ntBASIC18.12■□□□□ 0.49
USP39Q53GS9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.12■□□□□ 0.49
USP39Q53GS9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USP39Q53GS9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.11■□□□□ 0.49
USP39Q53GS9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.11■□□□□ 0.49
USP39Q53GS9 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 ABCD1P5-201ENST00000445663 754 ntBASIC18.11■□□□□ 0.49
USP39Q53GS9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
USP39Q53GS9 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.11■□□□□ 0.49
USP39Q53GS9 AC021087.4-201ENST00000563761 564 ntBASIC18.11■□□□□ 0.49
USP39Q53GS9 AC145285.3-201ENST00000564603 959 ntBASIC18.11■□□□□ 0.49
USP39Q53GS9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.11■□□□□ 0.49
USP39Q53GS9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 AC011467.2-201ENST00000598425 242 ntBASIC18.11■□□□□ 0.49
USP39Q53GS9 AL138831.2-201ENST00000606564 490 ntBASIC18.11■□□□□ 0.49
USP39Q53GS9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 AC104109.2-201ENST00000602919 1418 ntBASIC18.11■□□□□ 0.49
USP39Q53GS9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USP39Q53GS9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USP39Q53GS9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
USP39Q53GS9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
USP39Q53GS9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP39Q53GS9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms