Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.59■□□□□ 0.57
CDH6P55285 SPDYE13P-201ENST00000445314 798 ntBASIC18.59■□□□□ 0.57
CDH6P55285 AL671277.2-201ENST00000458060 996 ntBASIC18.59■□□□□ 0.57
CDH6P55285 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.59■□□□□ 0.57
CDH6P55285 AL049597.2-201ENST00000565575 961 ntBASIC18.59■□□□□ 0.57
CDH6P55285 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.59■□□□□ 0.57
CDH6P55285 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH6P55285 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH6P55285 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH6P55285 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CDH6P55285 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH6P55285 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH6P55285 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH6P55285 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH6P55285 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH6P55285 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH6P55285 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH6P55285 KRT8P47-201ENST00000604727 1398 ntBASIC18.58■□□□□ 0.57
CDH6P55285 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.58■□□□□ 0.57
CDH6P55285 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH6P55285 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH6P55285 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.58■□□□□ 0.56
CDH6P55285 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.58■□□□□ 0.56
CDH6P55285 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 AC005332.3-201ENST00000589904 676 ntBASIC18.58■□□□□ 0.56
CDH6P55285 AC116407.2-201ENST00000613639 860 ntBASIC18.58■□□□□ 0.56
CDH6P55285 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.58■□□□□ 0.56
CDH6P55285 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH6P55285 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CDH6P55285 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CDH6P55285 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 AL355312.1-201ENST00000407115 2176 ntBASIC18.58■□□□□ 0.56
CDH6P55285 AC009949.1-201ENST00000623048 1830 ntBASIC18.58■□□□□ 0.56
CDH6P55285 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.58■□□□□ 0.56
CDH6P55285 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH6P55285 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.57■□□□□ 0.56
CDH6P55285 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH6P55285 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CDH6P55285 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH6P55285 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.57■□□□□ 0.56
CDH6P55285 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.57■□□□□ 0.56
CDH6P55285 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 RNF126P1-202ENST00000569893 925 ntBASIC18.57■□□□□ 0.56
CDH6P55285 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CDH6P55285 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH6P55285 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CDH6P55285 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CDH6P55285 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CDH6P55285 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.56■□□□□ 0.56
CDH6P55285 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.56■□□□□ 0.56
CDH6P55285 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CDH6P55285 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms