Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HNF4AP41235 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.35■□□□□ 0.37
HNF4AP41235 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.34■□□□□ 0.37
HNF4AP41235 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HNF4AP41235 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.34■□□□□ 0.37
HNF4AP41235 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HNF4AP41235 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.34■□□□□ 0.37
HNF4AP41235 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.34■□□□□ 0.37
HNF4AP41235 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HNF4AP41235 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
HNF4AP41235 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HNF4AP41235 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.33■□□□□ 0.37
HNF4AP41235 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HNF4AP41235 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HNF4AP41235 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HNF4AP41235 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
HNF4AP41235 ARMC10P1-201ENST00000313754 855 ntBASIC17.33■□□□□ 0.36
HNF4AP41235 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 AL031133.1-201ENST00000406807 723 ntBASIC17.33■□□□□ 0.36
HNF4AP41235 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 KRT18P35-201ENST00000510488 1269 ntBASIC17.33■□□□□ 0.36
HNF4AP41235 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.33■□□□□ 0.36
HNF4AP41235 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.33■□□□□ 0.36
HNF4AP41235 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.33■□□□□ 0.36
HNF4AP41235 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.33■□□□□ 0.36
HNF4AP41235 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.33■□□□□ 0.36
HNF4AP41235 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.33■□□□□ 0.36
HNF4AP41235 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
HNF4AP41235 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HNF4AP41235 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.33■□□□□ 0.36
HNF4AP41235 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.32■□□□□ 0.36
HNF4AP41235 SPDYE13P-201ENST00000445314 798 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms