Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 VENTXP5-201ENST00000523979 775 ntBASIC17.29■□□□□ 0.36
LDLRP01130 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LDLRP01130 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 AL023973.1-201ENST00000624619 620 ntBASIC17.29■□□□□ 0.36
LDLRP01130 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LDLRP01130 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 AC084018.2-201ENST00000613093 2607 ntBASIC17.29■□□□□ 0.36
LDLRP01130 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LDLRP01130 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
LDLRP01130 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LDLRP01130 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
LDLRP01130 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 AC246785.2-201ENST00000432512 513 ntBASIC17.28■□□□□ 0.36
LDLRP01130 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.28■□□□□ 0.36
LDLRP01130 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.28■□□□□ 0.36
LDLRP01130 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 HLA-A-209ENST00000638375 975 ntBASIC17.28■□□□□ 0.36
LDLRP01130 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.28■□□□□ 0.36
LDLRP01130 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDLRP01130 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.28■□□□□ 0.36
LDLRP01130 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.27■□□□□ 0.36
LDLRP01130 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LDLRP01130 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LDLRP01130 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LDLRP01130 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.27■□□□□ 0.36
LDLRP01130 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDLRP01130 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.27■□□□□ 0.36
LDLRP01130 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDLRP01130 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.27■□□□□ 0.36
LDLRP01130 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.27■□□□□ 0.36
LDLRP01130 KRT18P38-201ENST00000449496 1282 ntBASIC17.27■□□□□ 0.36
LDLRP01130 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.27■□□□□ 0.36
LDLRP01130 AL353719.1-201ENST00000566847 864 ntBASIC17.27■□□□□ 0.36
LDLRP01130 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.27■□□□□ 0.36
LDLRP01130 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.27■□□□□ 0.36
LDLRP01130 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.27■□□□□ 0.36
LDLRP01130 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LDLRP01130 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.27■□□□□ 0.35
LDLRP01130 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.27■□□□□ 0.35
LDLRP01130 MYLKP1-201ENST00000509077 1580 ntBASIC17.27■□□□□ 0.35
LDLRP01130 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDLRP01130 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDLRP01130 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDLRP01130 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LDLRP01130 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 KRT8P41-201ENST00000533985 1514 ntBASIC17.26■□□□□ 0.35
LDLRP01130 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 AD000864.1-201ENST00000624076 2295 ntBASIC17.26■□□□□ 0.35
LDLRP01130 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.26■□□□□ 0.35
LDLRP01130 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.26■□□□□ 0.35
LDLRP01130 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.26■□□□□ 0.35
LDLRP01130 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDLRP01130 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms