Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.13■□□□□ 0.33
SEMA3DO95025 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.13■□□□□ 0.33
SEMA3DO95025 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SEMA3DO95025 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
SEMA3DO95025 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SEMA3DO95025 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SEMA3DO95025 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SEMA3DO95025 TSPY12P-201ENST00000421279 868 ntBASIC17.13■□□□□ 0.33
SEMA3DO95025 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.13■□□□□ 0.33
SEMA3DO95025 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.13■□□□□ 0.33
SEMA3DO95025 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.13■□□□□ 0.33
SEMA3DO95025 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.13■□□□□ 0.33
SEMA3DO95025 GPR32P1-201ENST00000601788 811 ntBASIC17.13■□□□□ 0.33
SEMA3DO95025 AC116407.2-201ENST00000613639 860 ntBASIC17.13■□□□□ 0.33
SEMA3DO95025 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.13■□□□□ 0.33
SEMA3DO95025 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.13■□□□□ 0.33
SEMA3DO95025 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SEMA3DO95025 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.13■□□□□ 0.33
SEMA3DO95025 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SEMA3DO95025 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SEMA3DO95025 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SEMA3DO95025 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 AC067852.2-201ENST00000590513 2313 ntBASIC17.12■□□□□ 0.33
SEMA3DO95025 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.12■□□□□ 0.33
SEMA3DO95025 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 VENTXP5-201ENST00000523979 775 ntBASIC17.12■□□□□ 0.33
SEMA3DO95025 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
SEMA3DO95025 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
SEMA3DO95025 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.12■□□□□ 0.33
SEMA3DO95025 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.12■□□□□ 0.33
SEMA3DO95025 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 AC100803.2-201ENST00000562459 1963 ntBASIC17.11■□□□□ 0.33
SEMA3DO95025 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.11■□□□□ 0.33
SEMA3DO95025 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.11■□□□□ 0.33
SEMA3DO95025 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
SEMA3DO95025 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.11■□□□□ 0.33
SEMA3DO95025 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.11■□□□□ 0.33
SEMA3DO95025 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.11■□□□□ 0.33
SEMA3DO95025 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.11■□□□□ 0.33
SEMA3DO95025 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SEMA3DO95025 AC083849.1-201ENST00000615227 514 ntBASIC17.11■□□□□ 0.33
SEMA3DO95025 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SEMA3DO95025 AL353692.3-201ENST00000407031 1396 ntBASIC17.11■□□□□ 0.33
SEMA3DO95025 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 PRORSD1P-202ENST00000563365 2154 ntBASIC17.11■□□□□ 0.33
SEMA3DO95025 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms