Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.77■□□□□ 0.92
CDKL5O76039 GUSBP12-201ENST00000513727 720 ntBASIC20.77■□□□□ 0.92
CDKL5O76039 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.77■□□□□ 0.92
CDKL5O76039 AC011498.5-201ENST00000592027 486 ntBASIC20.77■□□□□ 0.92
CDKL5O76039 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.77■□□□□ 0.92
CDKL5O76039 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.77■□□□□ 0.92
CDKL5O76039 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.77■□□□□ 0.92
CDKL5O76039 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CDKL5O76039 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDKL5O76039 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDKL5O76039 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDKL5O76039 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDKL5O76039 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDKL5O76039 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CDKL5O76039 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDKL5O76039 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDKL5O76039 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CDKL5O76039 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CDKL5O76039 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
CDKL5O76039 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.76■□□□□ 0.91
CDKL5O76039 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.76■□□□□ 0.91
CDKL5O76039 AL590326.2-201ENST00000625139 305 ntBASIC20.76■□□□□ 0.91
CDKL5O76039 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.76■□□□□ 0.91
CDKL5O76039 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CDKL5O76039 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDKL5O76039 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.76■□□□□ 0.91
CDKL5O76039 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.76■□□□□ 0.91
CDKL5O76039 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.75■□□□□ 0.91
CDKL5O76039 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.75■□□□□ 0.91
CDKL5O76039 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CDKL5O76039 LETM1P2-201ENST00000597330 2178 ntBASIC20.75■□□□□ 0.91
CDKL5O76039 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.75■□□□□ 0.91
CDKL5O76039 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.75■□□□□ 0.91
CDKL5O76039 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.75■□□□□ 0.91
CDKL5O76039 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.75■□□□□ 0.91
CDKL5O76039 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
CDKL5O76039 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
CDKL5O76039 NTF6B-201ENST00000591913 560 ntBASIC20.75■□□□□ 0.91
CDKL5O76039 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.75■□□□□ 0.91
CDKL5O76039 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CDKL5O76039 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDKL5O76039 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.74■□□□□ 0.91
CDKL5O76039 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 AC026471.1-201ENST00000564629 3026 ntBASIC20.74■□□□□ 0.91
CDKL5O76039 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CDKL5O76039 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
CDKL5O76039 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.74■□□□□ 0.91
CDKL5O76039 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.74■□□□□ 0.91
CDKL5O76039 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.74■□□□□ 0.91
CDKL5O76039 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.74■□□□□ 0.91
CDKL5O76039 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CDKL5O76039 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDKL5O76039 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CDKL5O76039 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.73■□□□□ 0.91
CDKL5O76039 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CDKL5O76039 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDKL5O76039 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms