Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 LINC00304-203ENST00000565008 1864 ntBASIC17.84■□□□□ 0.45
LDB2O43679 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB2O43679 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 AC016734.2-201ENST00000624325 1377 ntBASIC17.84■□□□□ 0.45
LDB2O43679 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 AC096633.1-201ENST00000422446 749 ntBASIC17.84■□□□□ 0.45
LDB2O43679 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB2O43679 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB2O43679 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.84■□□□□ 0.45
LDB2O43679 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.84■□□□□ 0.45
LDB2O43679 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDB2O43679 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
LDB2O43679 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.83■□□□□ 0.45
LDB2O43679 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.83■□□□□ 0.45
LDB2O43679 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.83■□□□□ 0.45
LDB2O43679 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LDB2O43679 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.83■□□□□ 0.44
LDB2O43679 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
LDB2O43679 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.83■□□□□ 0.44
LDB2O43679 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LDB2O43679 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 BX276092.5-203ENST00000456199 560 ntBASIC17.83■□□□□ 0.44
LDB2O43679 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.83■□□□□ 0.44
LDB2O43679 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.83■□□□□ 0.44
LDB2O43679 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LDB2O43679 IGHV3-41-201ENST00000613121 348 ntBASIC17.83■□□□□ 0.44
LDB2O43679 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.83■□□□□ 0.44
LDB2O43679 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
LDB2O43679 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LDB2O43679 AC133963.1-201ENST00000504166 1679 ntBASIC17.83■□□□□ 0.44
LDB2O43679 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LDB2O43679 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.83■□□□□ 0.44
LDB2O43679 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LDB2O43679 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LDB2O43679 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB2O43679 IER3-202ENST00000376377 1350 ntBASIC17.82■□□□□ 0.44
LDB2O43679 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB2O43679 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB2O43679 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LDB2O43679 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB2O43679 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.82■□□□□ 0.44
LDB2O43679 AL121672.3-201ENST00000608644 468 ntBASIC17.82■□□□□ 0.44
LDB2O43679 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.82■□□□□ 0.44
LDB2O43679 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.82■□□□□ 0.44
LDB2O43679 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LDB2O43679 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms