Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CBX4O00257 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.25■□□□□ 0.51
CBX4O00257 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CBX4O00257 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CBX4O00257 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
CBX4O00257 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CBX4O00257 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 NUS1P2-201ENST00000417358 873 ntBASIC18.25■□□□□ 0.51
CBX4O00257 EMBP1-201ENST00000458200 901 ntBASIC18.25■□□□□ 0.51
CBX4O00257 AC009078.2-202ENST00000463353 338 ntBASIC18.25■□□□□ 0.51
CBX4O00257 AC096582.2-201ENST00000510860 516 ntBASIC18.25■□□□□ 0.51
CBX4O00257 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.25■□□□□ 0.51
CBX4O00257 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.25■□□□□ 0.51
CBX4O00257 KRT8P47-201ENST00000604727 1398 ntBASIC18.25■□□□□ 0.51
CBX4O00257 AC138028.4-201ENST00000564984 1845 ntBASIC18.25■□□□□ 0.51
CBX4O00257 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CBX4O00257 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CBX4O00257 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CBX4O00257 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CBX4O00257 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CBX4O00257 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CBX4O00257 FLJ13224-201ENST00000313737 1514 ntBASIC18.24■□□□□ 0.51
CBX4O00257 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.24■□□□□ 0.51
CBX4O00257 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.24■□□□□ 0.51
CBX4O00257 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.24■□□□□ 0.51
CBX4O00257 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.24■□□□□ 0.51
CBX4O00257 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.24■□□□□ 0.51
CBX4O00257 BNIP3P18-201ENST00000593976 575 ntBASIC18.24■□□□□ 0.51
CBX4O00257 AL138831.2-201ENST00000606564 490 ntBASIC18.24■□□□□ 0.51
CBX4O00257 AL121772.3-201ENST00000610840 674 ntBASIC18.24■□□□□ 0.51
CBX4O00257 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CBX4O00257 AC125634.1-201ENST00000438758 1403 ntBASIC18.23■□□□□ 0.51
CBX4O00257 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CBX4O00257 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.23■□□□□ 0.51
CBX4O00257 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CBX4O00257 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CBX4O00257 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.23■□□□□ 0.51
CBX4O00257 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.23■□□□□ 0.51
CBX4O00257 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CBX4O00257 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CBX4O00257 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.23■□□□□ 0.51
CBX4O00257 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CBX4O00257 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CBX4O00257 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.22■□□□□ 0.51
CBX4O00257 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms