Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PDLIM1O00151 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
PDLIM1O00151 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 GMCL1P1-201ENST00000463439 1581 ntBASIC17.05■□□□□ 0.32
PDLIM1O00151 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM1O00151 RCC2P3-201ENST00000418112 1537 ntBASIC17.05■□□□□ 0.32
PDLIM1O00151 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
PDLIM1O00151 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.05■□□□□ 0.32
PDLIM1O00151 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PDLIM1O00151 KRT17P2-201ENST00000300992 1314 ntBASIC17.04■□□□□ 0.32
PDLIM1O00151 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PDLIM1O00151 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.04■□□□□ 0.32
PDLIM1O00151 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PDLIM1O00151 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 AL031985.4-201ENST00000642138 673 ntBASIC17.04■□□□□ 0.32
PDLIM1O00151 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
PDLIM1O00151 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.04■□□□□ 0.32
PDLIM1O00151 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PDLIM1O00151 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.04■□□□□ 0.32
PDLIM1O00151 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM1O00151 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM1O00151 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 MESTP1-201ENST00000404287 994 ntBASIC17.03■□□□□ 0.32
PDLIM1O00151 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 AP003071.4-201ENST00000562276 1284 ntBASIC17.03■□□□□ 0.32
PDLIM1O00151 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.03■□□□□ 0.32
PDLIM1O00151 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 AC131212.4-201ENST00000623606 975 ntBASIC17.03■□□□□ 0.32
PDLIM1O00151 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
PDLIM1O00151 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM1O00151 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM1O00151 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM1O00151 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.02■□□□□ 0.32
PDLIM1O00151 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM1O00151 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM1O00151 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM1O00151 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.02■□□□□ 0.32
PDLIM1O00151 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM1O00151 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms