Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 AL031008.1-201ENST00000619963 541 ntBASIC18.87■□□□□ 0.61
CDH9Q9ULB4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 AC135050.7-201ENST00000624508 2218 ntBASIC18.86■□□□□ 0.61
CDH9Q9ULB4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 AL354751.1-201ENST00000412768 1863 ntBASIC18.86■□□□□ 0.61
CDH9Q9ULB4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ABCD1P5-201ENST00000445663 754 ntBASIC18.86■□□□□ 0.61
CDH9Q9ULB4 AC106795.1-205ENST00000512851 1056 ntBASIC18.86■□□□□ 0.61
CDH9Q9ULB4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 AC104692.2-201ENST00000603054 253 ntBASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.86■□□□□ 0.61
CDH9Q9ULB4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 RBM17P3-201ENST00000417687 1192 ntBASIC18.85■□□□□ 0.61
CDH9Q9ULB4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AL160237.2-201ENST00000556165 472 ntBASIC18.85■□□□□ 0.61
CDH9Q9ULB4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AP001269.4-201ENST00000609611 512 ntBASIC18.85■□□□□ 0.61
CDH9Q9ULB4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AC138932.1-201ENST00000534164 6830 ntBASIC18.85■□□□□ 0.61
CDH9Q9ULB4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH9Q9ULB4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 AC020763.4-201ENST00000623414 4170 ntBASIC18.84■□□□□ 0.61
CDH9Q9ULB4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 AC009949.1-201ENST00000623048 1830 ntBASIC18.84■□□□□ 0.61
CDH9Q9ULB4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 AC008608.2-201ENST00000606089 416 ntBASIC18.84■□□□□ 0.61
CDH9Q9ULB4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH9Q9ULB4 AL355877.3-201ENST00000622820 899 ntBASIC18.84■□□□□ 0.61
CDH9Q9ULB4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms