Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL20A1Q9P218 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL20A1Q9P218 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL20A1Q9P218 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.14■□□□□ 0.82
COL20A1Q9P218 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 AL353593.2-201ENST00000602529 1483 ntBASIC20.14■□□□□ 0.81
COL20A1Q9P218 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 OR7E14P-202ENST00000530490 1290 ntBASIC20.14■□□□□ 0.81
COL20A1Q9P218 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 AC073592.5-201ENST00000624854 528 ntBASIC20.14■□□□□ 0.81
COL20A1Q9P218 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.14■□□□□ 0.81
COL20A1Q9P218 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL20A1Q9P218 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 SPDYE21P-201ENST00000413323 827 ntBASIC20.13■□□□□ 0.81
COL20A1Q9P218 AC103564.2-201ENST00000432853 1299 ntBASIC20.13■□□□□ 0.81
COL20A1Q9P218 AC093909.1-201ENST00000504731 1122 ntBASIC20.13■□□□□ 0.81
COL20A1Q9P218 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 IGHV3-22-201ENST00000520721 359 ntBASIC20.13■□□□□ 0.81
COL20A1Q9P218 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
COL20A1Q9P218 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL20A1Q9P218 AC148477.5-201ENST00000625164 1645 ntBASIC20.13■□□□□ 0.81
COL20A1Q9P218 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 SIGLEC16-201ENST00000599858 1437 ntBASIC20.12■□□□□ 0.81
COL20A1Q9P218 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 BICD1-207ENST00000551848 1962 ntBASIC20.12■□□□□ 0.81
COL20A1Q9P218 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 RPL13AP23-201ENST00000480739 586 ntBASIC20.12■□□□□ 0.81
COL20A1Q9P218 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 AC107918.4-202ENST00000641623 219 ntBASIC20.12■□□□□ 0.81
COL20A1Q9P218 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL20A1Q9P218 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.12■□□□□ 0.81
COL20A1Q9P218 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.11■□□□□ 0.81
COL20A1Q9P218 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL20A1Q9P218 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.11■□□□□ 0.81
COL20A1Q9P218 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL20A1Q9P218 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL20A1Q9P218 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL20A1Q9P218 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL20A1Q9P218 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms