Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 MIR3180-4-201ENST00000582223 153 ntBASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 KRT18P55-202ENST00000578578 1546 ntBASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 LINC01568-207ENST00000641790 1380 ntBASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 AC108860.2-201ENST00000562760 2183 ntBASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 MIR1224-201ENST00000408193 85 ntBASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 HMGA1P5-201ENST00000412453 271 ntBASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 AC141586.5-201ENST00000624546 2050 ntBASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM56Q9BRZ2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 MIR3917-201ENST00000580971 93 ntBASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 AC133561.5-201ENST00000635547 218 ntBASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM56Q9BRZ2 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM56Q9BRZ2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms