Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC091304.2-201ENST00000564639 760 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC012615.1-201ENST00000565797 1299 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 IGHV3-41-201ENST00000613121 348 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC012317.2-201ENST00000623305 2251 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AL645608.8-201ENST00000606034 2086 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC093677.2-201ENST00000600169 1863 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 AC138028.4-201ENST00000564984 1845 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 PCDHA12-202ENST00000613593 2588 ntBASIC18.35■□□□□ 0.53
SKA1Q96BD8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 KRT8P32-201ENST00000512863 1461 ntBASIC18.34■□□□□ 0.53
SKA1Q96BD8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 AL845331.1-201ENST00000424978 1190 ntBASIC18.34■□□□□ 0.53
SKA1Q96BD8 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA1Q96BD8 Z83836.1-201ENST00000624605 1642 ntBASIC18.34■□□□□ 0.53
SKA1Q96BD8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.34■□□□□ 0.53
SKA1Q96BD8 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SKA1Q96BD8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.33■□□□□ 0.53
SKA1Q96BD8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SKA1Q96BD8 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SKA1Q96BD8 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.33■□□□□ 0.53
SKA1Q96BD8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SKA1Q96BD8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SKA1Q96BD8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SKA1Q96BD8 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SKA1Q96BD8 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SKA1Q96BD8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.33■□□□□ 0.52
SKA1Q96BD8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms