Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SLC9A7P1-201ENST00000554295 3311 ntBASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MIR3180-4-201ENST00000582223 153 ntBASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AC132008.2-207ENST00000454517 770 ntBASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SPEG-225ENST00000617028 815 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NEFHP1-201ENST00000412845 2629 ntBASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 POLI-202ENST00000406285 2030 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MTMR9LP-203ENST00000426597 1545 ntBASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 FST-202ENST00000396947 2538 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SYNE1Q8NF91 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC5.52□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms