Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 RCC2P3-201ENST00000418112 1537 ntBASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 AC008894.3-201ENST00000624324 3103 ntBASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 NUDT16P1-203ENST00000513809 620 ntBASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ZNF540Q8NDQ6 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 MIR1224-201ENST00000408193 85 ntBASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 KRT18P41-201ENST00000518924 1277 ntBASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 KRT8P11-201ENST00000409686 1436 ntBASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
ZNF540Q8NDQ6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ZNF540Q8NDQ6 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
ZNF540Q8NDQ6 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ZNF540Q8NDQ6 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ZNF540Q8NDQ6 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 NIFKP9-201ENST00000419265 221 ntBASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 C1QL1P1-201ENST00000568105 661 ntBASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 KRT18P55-202ENST00000578578 1546 ntBASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
ZNF540Q8NDQ6 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ZNF540Q8NDQ6 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms