Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 AC002310.6-201ENST00000624451 1377 ntBASIC15.34■□□□□ 0.05
ABCA4P78363 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.34■□□□□ 0.05
ABCA4P78363 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.34■□□□□ 0.05
ABCA4P78363 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
ABCA4P78363 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.34■□□□□ 0.05
ABCA4P78363 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
ABCA4P78363 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA4P78363 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
ABCA4P78363 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ABCA4P78363 AC010460.3-201ENST00000511359 1579 ntBASIC15.33■□□□□ 0.05
ABCA4P78363 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ABCA4P78363 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ABCA4P78363 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.33■□□□□ 0.05
ABCA4P78363 MCCD1P2-201ENST00000423228 335 ntBASIC15.33■□□□□ 0.05
ABCA4P78363 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.33■□□□□ 0.05
ABCA4P78363 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15.33■□□□□ 0.05
ABCA4P78363 AC097374.2-201ENST00000618617 1306 ntBASIC15.33■□□□□ 0.04
ABCA4P78363 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
ABCA4P78363 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCA4P78363 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCA4P78363 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCA4P78363 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ABCA4P78363 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ABCA4P78363 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCA4P78363 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
ABCA4P78363 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCA4P78363 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCA4P78363 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCA4P78363 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ABCA4P78363 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
ABCA4P78363 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.33■□□□□ 0.04
ABCA4P78363 KRT8P47-201ENST00000604727 1398 ntBASIC15.33■□□□□ 0.04
ABCA4P78363 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCA4P78363 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ABCA4P78363 RPS2P28-201ENST00000314255 741 ntBASIC15.32■□□□□ 0.04
ABCA4P78363 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.32■□□□□ 0.04
ABCA4P78363 AC136632.2-201ENST00000512891 861 ntBASIC15.32■□□□□ 0.04
ABCA4P78363 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCA4P78363 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.32■□□□□ 0.04
ABCA4P78363 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 FAM8A3P-201ENST00000427218 844 ntBASIC15.32■□□□□ 0.04
ABCA4P78363 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCA4P78363 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.32■□□□□ 0.04
ABCA4P78363 KRT18P2-201ENST00000447938 1258 ntBASIC15.32■□□□□ 0.04
ABCA4P78363 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
ABCA4P78363 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCA4P78363 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.32■□□□□ 0.04
ABCA4P78363 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.32■□□□□ 0.04
ABCA4P78363 MTDHP5-201ENST00000598980 586 ntBASIC15.32■□□□□ 0.04
ABCA4P78363 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.32■□□□□ 0.04
ABCA4P78363 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCA4P78363 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCA4P78363 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms