Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VSX2P58304 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 AC022898.2-201ENST00000616822 1312 ntBASIC17.12■□□□□ 0.33
VSX2P58304 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
VSX2P58304 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VSX2P58304 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.12■□□□□ 0.33
VSX2P58304 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.12■□□□□ 0.33
VSX2P58304 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VSX2P58304 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VSX2P58304 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VSX2P58304 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
VSX2P58304 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VSX2P58304 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VSX2P58304 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.11■□□□□ 0.33
VSX2P58304 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.11■□□□□ 0.33
VSX2P58304 KRT126P-201ENST00000549467 1181 ntBASIC17.11■□□□□ 0.33
VSX2P58304 AC005336.2-201ENST00000593183 939 ntBASIC17.11■□□□□ 0.33
VSX2P58304 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.11■□□□□ 0.33
VSX2P58304 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VSX2P58304 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.11■□□□□ 0.33
VSX2P58304 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VSX2P58304 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VSX2P58304 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
VSX2P58304 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.1■□□□□ 0.33
VSX2P58304 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
VSX2P58304 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.1■□□□□ 0.33
VSX2P58304 DUTP2-201ENST00000519164 463 ntBASIC17.1■□□□□ 0.33
VSX2P58304 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VSX2P58304 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.1■□□□□ 0.33
VSX2P58304 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VSX2P58304 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.1■□□□□ 0.33
VSX2P58304 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VSX2P58304 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VSX2P58304 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VSX2P58304 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VSX2P58304 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 BICD1-207ENST00000551848 1962 ntBASIC17.09■□□□□ 0.33
VSX2P58304 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VSX2P58304 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
VSX2P58304 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
VSX2P58304 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VSX2P58304 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 NUS1P2-201ENST00000417358 873 ntBASIC17.09■□□□□ 0.33
VSX2P58304 AL450487.1-201ENST00000426799 995 ntBASIC17.09■□□□□ 0.33
VSX2P58304 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VSX2P58304 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.09■□□□□ 0.33
VSX2P58304 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.09■□□□□ 0.33
VSX2P58304 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.09■□□□□ 0.33
VSX2P58304 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.09■□□□□ 0.33
VSX2P58304 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms