Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
COL4A4P53420 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.99■□□□□ 0.63
COL4A4P53420 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A4P53420 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A4P53420 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 GMCL1P1-201ENST00000463439 1581 ntBASIC18.99■□□□□ 0.63
COL4A4P53420 AC010460.3-201ENST00000511359 1579 ntBASIC18.99■□□□□ 0.63
COL4A4P53420 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A4P53420 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A4P53420 NCF1C-201ENST00000438382 1427 ntBASIC18.99■□□□□ 0.63
COL4A4P53420 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A4P53420 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 BCRP1-201ENST00000444246 691 ntBASIC18.98■□□□□ 0.63
COL4A4P53420 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 AL096865.1-201ENST00000606796 927 ntBASIC18.98■□□□□ 0.63
COL4A4P53420 PHGDH-209ENST00000641074 1780 ntBASIC18.98■□□□□ 0.63
COL4A4P53420 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A4P53420 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 BICD1-207ENST00000551848 1962 ntBASIC18.98■□□□□ 0.63
COL4A4P53420 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A4P53420 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A4P53420 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.98■□□□□ 0.63
COL4A4P53420 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.98■□□□□ 0.63
COL4A4P53420 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
COL4A4P53420 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.98■□□□□ 0.63
COL4A4P53420 PDPK2P-202ENST00000562415 1191 ntBASIC18.98■□□□□ 0.63
COL4A4P53420 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A4P53420 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A4P53420 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A4P53420 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A4P53420 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL4A4P53420 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL4A4P53420 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.97■□□□□ 0.63
COL4A4P53420 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL4A4P53420 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL4A4P53420 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.97■□□□□ 0.63
COL4A4P53420 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A4P53420 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A4P53420 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.97■□□□□ 0.63
COL4A4P53420 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.97■□□□□ 0.63
COL4A4P53420 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
COL4A4P53420 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
COL4A4P53420 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A4P53420 KRT8P47-201ENST00000604727 1398 ntBASIC18.97■□□□□ 0.63
COL4A4P53420 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL4A4P53420 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL4A4P53420 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
COL4A4P53420 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
COL4A4P53420 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A4P53420 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.96■□□□□ 0.63
COL4A4P53420 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.96■□□□□ 0.63
COL4A4P53420 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A4P53420 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A4P53420 AC010654.1-201ENST00000615722 808 ntBASIC18.96■□□□□ 0.63
COL4A4P53420 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
COL4A4P53420 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A4P53420 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.96■□□□□ 0.63
COL4A4P53420 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL4A4P53420 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.96■□□□□ 0.63
COL4A4P53420 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.96■□□□□ 0.62
COL4A4P53420 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL4A4P53420 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms