Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.63□□□□□ -0.07
CDX1P47902 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.63□□□□□ -0.07
CDX1P47902 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.62□□□□□ -0.07
CDX1P47902 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CDX1P47902 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 ANKRD20A18P-201ENST00000359341 492 ntBASIC14.62□□□□□ -0.07
CDX1P47902 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.62□□□□□ -0.07
CDX1P47902 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 TSPY5P-201ENST00000426936 936 ntBASIC14.62□□□□□ -0.07
CDX1P47902 YBX1P2-201ENST00000489612 999 ntBASIC14.62□□□□□ -0.07
CDX1P47902 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 AC063952.2-201ENST00000498792 1227 ntBASIC14.62□□□□□ -0.07
CDX1P47902 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.62□□□□□ -0.07
CDX1P47902 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.62□□□□□ -0.07
CDX1P47902 WWOX-216ENST00000569818 525 ntBASIC14.62□□□□□ -0.07
CDX1P47902 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CDX1P47902 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.62□□□□□ -0.07
CDX1P47902 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CDX1P47902 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.62□□□□□ -0.07
CDX1P47902 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CDX1P47902 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 AC092850.2-201ENST00000623821 2697 ntBASIC14.61□□□□□ -0.07
CDX1P47902 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.61□□□□□ -0.07
CDX1P47902 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CDX1P47902 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC14.61□□□□□ -0.07
CDX1P47902 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CDX1P47902 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.61□□□□□ -0.07
CDX1P47902 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 ARMC10P1-201ENST00000313754 855 ntBASIC14.61□□□□□ -0.07
CDX1P47902 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CDX1P47902 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.61□□□□□ -0.07
CDX1P47902 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.61□□□□□ -0.07
CDX1P47902 KRT18P35-201ENST00000510488 1269 ntBASIC14.61□□□□□ -0.07
CDX1P47902 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.61□□□□□ -0.07
CDX1P47902 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 AL445228.2-201ENST00000605589 952 ntBASIC14.61□□□□□ -0.07
CDX1P47902 AC008622.2-201ENST00000617006 1229 ntBASIC14.61□□□□□ -0.07
CDX1P47902 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms