Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
COL1A1P02452 KRT18P3-201ENST00000451602 1288 ntBASIC21.41■■□□□ 1.02
COL1A1P02452 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 AP001160.2-201ENST00000596071 487 ntBASIC21.41■■□□□ 1.02
COL1A1P02452 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.41■■□□□ 1.02
COL1A1P02452 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.41■■□□□ 1.02
COL1A1P02452 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 AC073621.1-201ENST00000392730 636 ntBASIC21.4■■□□□ 1.02
COL1A1P02452 GGCT-205ENST00000409436 954 ntTSL 3 BASIC21.4■■□□□ 1.02
COL1A1P02452 ELK2BP-201ENST00000415014 1224 ntBASIC21.4■■□□□ 1.02
COL1A1P02452 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC21.4■■□□□ 1.02
COL1A1P02452 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC21.4■■□□□ 1.02
COL1A1P02452 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.4■■□□□ 1.02
COL1A1P02452 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.4■■□□□ 1.02
COL1A1P02452 AL022326.1-202ENST00000641533 845 ntBASIC21.4■■□□□ 1.02
COL1A1P02452 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.4■■□□□ 1.02
COL1A1P02452 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL1A1P02452 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.4■■□□□ 1.02
COL1A1P02452 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL1A1P02452 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
COL1A1P02452 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
COL1A1P02452 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL1A1P02452 KLF4P1-201ENST00000412782 1185 ntBASIC21.39■■□□□ 1.02
COL1A1P02452 AC004832.2-201ENST00000426397 482 ntBASIC21.39■■□□□ 1.02
COL1A1P02452 HMGN1P19-201ENST00000436976 333 ntBASIC21.39■■□□□ 1.02
COL1A1P02452 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
COL1A1P02452 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL1A1P02452 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL1A1P02452 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL1A1P02452 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
COL1A1P02452 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL1A1P02452 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.39■■□□□ 1.02
COL1A1P02452 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.39■■□□□ 1.02
COL1A1P02452 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.39■■□□□ 1.01
COL1A1P02452 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
COL1A1P02452 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.39■■□□□ 1.01
COL1A1P02452 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.39■■□□□ 1.01
COL1A1P02452 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL1A1P02452 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
COL1A1P02452 AC004967.1-201ENST00000453589 447 ntBASIC21.39■■□□□ 1.01
COL1A1P02452 RNA5SP416-201ENST00000516838 111 ntBASIC21.39■■□□□ 1.01
COL1A1P02452 AC105339.3-201ENST00000560043 636 ntBASIC21.39■■□□□ 1.01
COL1A1P02452 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
COL1A1P02452 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.38■■□□□ 1.01
COL1A1P02452 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.38■■□□□ 1.01
COL1A1P02452 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.38■■□□□ 1.01
COL1A1P02452 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL1A1P02452 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL1A1P02452 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.38■■□□□ 1.01
COL1A1P02452 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
COL1A1P02452 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL1A1P02452 DDX43P3-201ENST00000441064 443 ntBASIC21.38■■□□□ 1.01
COL1A1P02452 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.38■■□□□ 1.01
COL1A1P02452 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.38■■□□□ 1.01
COL1A1P02452 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.38■■□□□ 1.01
COL1A1P02452 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.38■■□□□ 1.01
COL1A1P02452 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.38■■□□□ 1.01
COL1A1P02452 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.37■■□□□ 1.01
COL1A1P02452 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
COL1A1P02452 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL1A1P02452 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms