Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
BRD4O60885 RPL13AP23-201ENST00000480739 586 ntBASIC24.67■■□□□ 1.54
BRD4O60885 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC24.67■■□□□ 1.54
BRD4O60885 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC24.67■■□□□ 1.54
BRD4O60885 AC021087.4-201ENST00000563761 564 ntBASIC24.67■■□□□ 1.54
BRD4O60885 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
BRD4O60885 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BRD4O60885 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
BRD4O60885 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
BRD4O60885 PMS2P7-201ENST00000506558 1336 ntBASIC24.66■■□□□ 1.54
BRD4O60885 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC24.66■■□□□ 1.54
BRD4O60885 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC24.66■■□□□ 1.54
BRD4O60885 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC24.66■■□□□ 1.54
BRD4O60885 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRD4O60885 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC24.66■■□□□ 1.54
BRD4O60885 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC24.66■■□□□ 1.54
BRD4O60885 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC24.66■■□□□ 1.54
BRD4O60885 KIRREL3-AS3-201ENST00000404882 831 ntBASIC24.66■■□□□ 1.54
BRD4O60885 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC24.66■■□□□ 1.54
BRD4O60885 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC24.66■■□□□ 1.54
BRD4O60885 PAM16-208ENST00000573553 722 ntTSL 2 BASIC24.66■■□□□ 1.54
BRD4O60885 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC24.66■■□□□ 1.54
BRD4O60885 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC24.66■■□□□ 1.54
BRD4O60885 AC116407.3-201ENST00000623905 1129 ntBASIC24.66■■□□□ 1.54
BRD4O60885 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC24.66■■□□□ 1.54
BRD4O60885 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC24.65■■□□□ 1.54
BRD4O60885 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC24.65■■□□□ 1.54
BRD4O60885 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 FLJ13224-201ENST00000313737 1514 ntBASIC24.65■■□□□ 1.54
BRD4O60885 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
BRD4O60885 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 SART3-203ENST00000546611 1184 ntBASIC24.65■■□□□ 1.54
BRD4O60885 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC24.65■■□□□ 1.54
BRD4O60885 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRD4O60885 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC24.65■■□□□ 1.54
BRD4O60885 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
BRD4O60885 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC24.64■■□□□ 1.54
BRD4O60885 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
BRD4O60885 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
BRD4O60885 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC24.64■■□□□ 1.54
BRD4O60885 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
BRD4O60885 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.53
BRD4O60885 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
BRD4O60885 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC24.64■■□□□ 1.53
BRD4O60885 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC24.64■■□□□ 1.53
BRD4O60885 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC24.64■■□□□ 1.53
BRD4O60885 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
BRD4O60885 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
BRD4O60885 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC24.64■■□□□ 1.53
BRD4O60885 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
BRD4O60885 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
BRD4O60885 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
BRD4O60885 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
BRD4O60885 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC24.63■■□□□ 1.53
BRD4O60885 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC24.63■■□□□ 1.53
BRD4O60885 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC24.63■■□□□ 1.53
BRD4O60885 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC24.63■■□□□ 1.53
BRD4O60885 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC24.63■■□□□ 1.53
BRD4O60885 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
BRD4O60885 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC24.63■■□□□ 1.53
BRD4O60885 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
BRD4O60885 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
BRD4O60885 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
BRD4O60885 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms