Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 SIRPAP1-201ENST00000448467 1770 ntBASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM49BA6NDI0 AC133963.1-201ENST00000504166 1679 ntBASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 AC138932.1-201ENST00000534164 6830 ntBASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 KRT18P48-201ENST00000434763 852 ntBASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 KRT18P65-201ENST00000439811 1286 ntBASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 AL359075.1-203ENST00000462729 1002 ntBASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM49BA6NDI0 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
TRIM49BA6NDI0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49BA6NDI0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 VENTXP5-201ENST00000523979 775 ntBASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49BA6NDI0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49BA6NDI0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms