Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS9D1Q9Y2B5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 IGHGP-201ENST00000390555 1178 ntBASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 AC112907.2-201ENST00000448639 330 ntBASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 AL359075.1-203ENST00000462729 1002 ntBASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS9D1Q9Y2B5 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS9D1Q9Y2B5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS9D1Q9Y2B5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS9D1Q9Y2B5 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.83■□□□□ 0.45
VPS9D1Q9Y2B5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
VPS9D1Q9Y2B5 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 AC092597.1-201ENST00000487352 616 ntBASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 AC063952.2-201ENST00000498792 1227 ntBASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 AC067852.2-201ENST00000590513 2313 ntBASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS9D1Q9Y2B5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 GPR32P1-201ENST00000601788 811 ntBASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 AC004263.2-201ENST00000617183 678 ntBASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS9D1Q9Y2B5 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 LINC01311-201ENST00000565162 1445 ntBASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms