Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 IFNL4P1-201ENST00000607083 540 ntBASIC19.12■□□□□ 0.65
SIX4Q9UIU6 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX4Q9UIU6 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX4Q9UIU6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.12■□□□□ 0.65
SIX4Q9UIU6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX4Q9UIU6 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 RNF165-205ENST00000588679 2904 ntBASIC19.11■□□□□ 0.65
SIX4Q9UIU6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SIX4Q9UIU6 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 COX5BP2-201ENST00000392354 334 ntBASIC19.1■□□□□ 0.65
SIX4Q9UIU6 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 SLC25A6P5-201ENST00000435663 894 ntBASIC19.1■□□□□ 0.65
SIX4Q9UIU6 DDX43P3-201ENST00000441064 443 ntBASIC19.1■□□□□ 0.65
SIX4Q9UIU6 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AL591684.3-201ENST00000605187 298 ntBASIC19.1■□□□□ 0.65
SIX4Q9UIU6 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AC116407.2-201ENST00000613639 860 ntBASIC19.1■□□□□ 0.65
SIX4Q9UIU6 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AC006116.8-202ENST00000587620 1550 ntBASIC19.1■□□□□ 0.65
SIX4Q9UIU6 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SIX4Q9UIU6 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 AKR1C7P-201ENST00000305623 895 ntBASIC19.09■□□□□ 0.65
SIX4Q9UIU6 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.09■□□□□ 0.65
SIX4Q9UIU6 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms