Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SLC25A6P5-201ENST00000435663 894 ntBASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AC009947.2-201ENST00000444014 672 ntBASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AC010240.3-201ENST00000607688 395 ntBASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AC024243.1-201ENST00000609234 778 ntBASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 AL024508.2-201ENST00000607749 1894 ntBASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.81■□□□□ 0.28
CLIP4Q8N3C7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 SEC1P-202ENST00000473944 940 ntBASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 AC093827.2-201ENST00000512654 315 ntBASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 MIR3180-4-201ENST00000582223 153 ntBASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLIP4Q8N3C7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms