Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 AC112777.1-201ENST00000540175 1423 ntBASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 AC104417.2-201ENST00000562989 1793 ntBASIC11.16□□□□□ -0.62
LINC00643Q86TS7 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 KRT18P55-202ENST00000578578 1546 ntBASIC11.16□□□□□ -0.62
LINC00643Q86TS7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 GRK6P1-201ENST00000400595 1711 ntBASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SLC9A7P1-201ENST00000554295 3311 ntBASIC11.16□□□□□ -0.62
LINC00643Q86TS7 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC11.16□□□□□ -0.62
LINC00643Q86TS7 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC11.15□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms