Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF38Q9H0F5 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF38Q9H0F5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 FAM220CP-201ENST00000395253 831 ntBASIC18.53■□□□□ 0.56
RNF38Q9H0F5 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AL031284.1-201ENST00000419297 478 ntBASIC18.53■□□□□ 0.56
RNF38Q9H0F5 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 HNRNPDP1-201ENST00000439535 754 ntBASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AC018712.1-201ENST00000455767 687 ntBASIC18.53■□□□□ 0.56
RNF38Q9H0F5 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AF186996.4-201ENST00000467186 377 ntBASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AP001005.1-201ENST00000571755 1248 ntBASIC18.53■□□□□ 0.56
RNF38Q9H0F5 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF38Q9H0F5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 AC022898.2-201ENST00000616822 1312 ntBASIC18.52■□□□□ 0.56
RNF38Q9H0F5 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 AL022342.1-201ENST00000400363 863 ntBASIC18.52■□□□□ 0.56
RNF38Q9H0F5 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.52■□□□□ 0.56
RNF38Q9H0F5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.52■□□□□ 0.56
RNF38Q9H0F5 SART3-203ENST00000546611 1184 ntBASIC18.52■□□□□ 0.56
RNF38Q9H0F5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms