Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRIM4Q9C037 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM4Q9C037 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TRIM4Q9C037 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRIM4Q9C037 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRIM4Q9C037 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 ESPNP-201ENST00000270691 2015 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 AL596257.1-201ENST00000641463 2694 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 AP000593.1-201ENST00000393668 712 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 TSPY23P-201ENST00000440136 739 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 AL359075.1-203ENST00000462729 1002 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 AL512353.2-201ENST00000448759 1962 ntBASIC17.95■□□□□ 0.46
TRIM4Q9C037 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TRIM4Q9C037 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM4Q9C037 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM4Q9C037 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM4Q9C037 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM4Q9C037 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM4Q9C037 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM4Q9C037 COX11P1-201ENST00000489116 835 ntBASIC17.94■□□□□ 0.46
TRIM4Q9C037 AL138966.2-201ENST00000621997 464 ntBASIC17.94■□□□□ 0.46
TRIM4Q9C037 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM4Q9C037 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM4Q9C037 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 B3GAT3P1-201ENST00000471720 806 ntBASIC17.93■□□□□ 0.46
TRIM4Q9C037 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 Z85996.1-201ENST00000494644 937 ntBASIC17.93■□□□□ 0.46
TRIM4Q9C037 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 AC006538.3-201ENST00000612495 578 ntBASIC17.93■□□□□ 0.46
TRIM4Q9C037 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.93■□□□□ 0.46
TRIM4Q9C037 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 AC005332.1-201ENST00000577698 1310 ntBASIC17.93■□□□□ 0.46
TRIM4Q9C037 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM4Q9C037 AC073592.3-201ENST00000625118 1834 ntBASIC17.93■□□□□ 0.46
TRIM4Q9C037 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM4Q9C037 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms