Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 AC091607.1-201ENST00000490318 1060 ntBASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFWD3Q6PCD5 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 AC233702.3-201ENST00000578656 1387 ntBASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 PHGDH-209ENST00000641074 1780 ntBASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 LINC00167-201ENST00000530583 1419 ntBASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 AL845331.1-201ENST00000424978 1190 ntBASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFWD3Q6PCD5 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 AP005901.3-202ENST00000581653 237 ntBASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFWD3Q6PCD5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RFWD3Q6PCD5 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms