Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KRT18P48-201ENST00000434763 852 ntBASIC16.06■□□□□ 0.16
CLRN1P58418 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.06■□□□□ 0.16
CLRN1P58418 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
CLRN1P58418 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 AC006011.2-201ENST00000621313 1158 ntBASIC16.06■□□□□ 0.16
CLRN1P58418 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLRN1P58418 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
CLRN1P58418 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CLRN1P58418 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 AC113404.2-201ENST00000507884 177 ntBASIC16.05■□□□□ 0.16
CLRN1P58418 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.05■□□□□ 0.16
CLRN1P58418 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
CLRN1P58418 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.05■□□□□ 0.16
CLRN1P58418 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 GNAS-203ENST00000306120 1878 ntBASIC16.05■□□□□ 0.16
CLRN1P58418 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CLRN1P58418 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.05■□□□□ 0.16
CLRN1P58418 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CLRN1P58418 AC132938.6-201ENST00000623828 1655 ntBASIC16.05■□□□□ 0.16
CLRN1P58418 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLRN1P58418 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 KRT89P-201ENST00000620027 1478 ntBASIC16.04■□□□□ 0.16
CLRN1P58418 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CLRN1P58418 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
CLRN1P58418 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CLRN1P58418 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.04■□□□□ 0.16
CLRN1P58418 ZNF444P1-201ENST00000559497 298 ntBASIC16.04■□□□□ 0.16
CLRN1P58418 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.04■□□□□ 0.16
CLRN1P58418 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.04■□□□□ 0.16
CLRN1P58418 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.04■□□□□ 0.16
CLRN1P58418 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
CLRN1P58418 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
CLRN1P58418 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.04■□□□□ 0.16
CLRN1P58418 KRT18P55-202ENST00000578578 1546 ntBASIC16.04■□□□□ 0.16
CLRN1P58418 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CLRN1P58418 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLRN1P58418 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CLRN1P58418 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CLRN1P58418 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 AC134043.2-201ENST00000624206 2238 ntBASIC16.03■□□□□ 0.16
CLRN1P58418 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.03■□□□□ 0.16
CLRN1P58418 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN1P58418 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms