Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 AC008764.6-201ENST00000595909 2069 ntBASIC17.06■□□□□ 0.32
PROM1O43490 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.05■□□□□ 0.32
PROM1O43490 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.05■□□□□ 0.32
PROM1O43490 AL136038.3-201ENST00000561909 1096 ntBASIC17.05■□□□□ 0.32
PROM1O43490 AC005332.3-201ENST00000589904 676 ntBASIC17.05■□□□□ 0.32
PROM1O43490 GPR32P1-201ENST00000601788 811 ntBASIC17.05■□□□□ 0.32
PROM1O43490 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.05■□□□□ 0.32
PROM1O43490 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.05■□□□□ 0.32
PROM1O43490 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.05■□□□□ 0.32
PROM1O43490 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 AC068880.1-201ENST00000507289 2297 ntBASIC17.05■□□□□ 0.32
PROM1O43490 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PROM1O43490 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.05■□□□□ 0.32
PROM1O43490 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.05■□□□□ 0.32
PROM1O43490 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PROM1O43490 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PROM1O43490 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PROM1O43490 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.04■□□□□ 0.32
PROM1O43490 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.04■□□□□ 0.32
PROM1O43490 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.04■□□□□ 0.32
PROM1O43490 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.04■□□□□ 0.32
PROM1O43490 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.04■□□□□ 0.32
PROM1O43490 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.04■□□□□ 0.32
PROM1O43490 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.04■□□□□ 0.32
PROM1O43490 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.04■□□□□ 0.32
PROM1O43490 KRT18P65-201ENST00000439811 1286 ntBASIC17.04■□□□□ 0.32
PROM1O43490 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.04■□□□□ 0.32
PROM1O43490 RNF126P1-202ENST00000569893 925 ntBASIC17.04■□□□□ 0.32
PROM1O43490 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.04■□□□□ 0.32
PROM1O43490 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PROM1O43490 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.04■□□□□ 0.32
PROM1O43490 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.04■□□□□ 0.32
PROM1O43490 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PROM1O43490 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 AL353692.3-201ENST00000407031 1396 ntBASIC17.03■□□□□ 0.32
PROM1O43490 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 AC022898.2-201ENST00000616822 1312 ntBASIC17.03■□□□□ 0.32
PROM1O43490 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 KRT18P55-202ENST00000578578 1546 ntBASIC17.03■□□□□ 0.32
PROM1O43490 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.03■□□□□ 0.32
PROM1O43490 AL645929.1-201ENST00000420084 975 ntBASIC17.03■□□□□ 0.32
PROM1O43490 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PROM1O43490 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.03■□□□□ 0.32
PROM1O43490 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.03■□□□□ 0.32
PROM1O43490 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.03■□□□□ 0.32
PROM1O43490 AL121956.5-201ENST00000625261 221 ntBASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms