Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH4O15457 KRT16P4-201ENST00000453883 522 ntBASIC20.12■□□□□ 0.81
MSH4O15457 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
MSH4O15457 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.12■□□□□ 0.81
MSH4O15457 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH4O15457 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.12■□□□□ 0.81
MSH4O15457 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.12■□□□□ 0.81
MSH4O15457 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.12■□□□□ 0.81
MSH4O15457 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
MSH4O15457 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH4O15457 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
MSH4O15457 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH4O15457 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH4O15457 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.12■□□□□ 0.81
MSH4O15457 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH4O15457 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
MSH4O15457 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSH4O15457 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSH4O15457 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
MSH4O15457 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 AC009949.1-201ENST00000623048 1830 ntBASIC20.11■□□□□ 0.81
MSH4O15457 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSH4O15457 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
MSH4O15457 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSH4O15457 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
MSH4O15457 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH4O15457 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.11■□□□□ 0.81
MSH4O15457 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.11■□□□□ 0.81
MSH4O15457 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.11■□□□□ 0.81
MSH4O15457 IFNL4P1-201ENST00000607083 540 ntBASIC20.11■□□□□ 0.81
MSH4O15457 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.11■□□□□ 0.81
MSH4O15457 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH4O15457 INTS4P1-201ENST00000438455 1935 ntBASIC20.11■□□□□ 0.81
MSH4O15457 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH4O15457 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.11■□□□□ 0.81
MSH4O15457 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.11■□□□□ 0.81
MSH4O15457 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH4O15457 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH4O15457 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH4O15457 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
MSH4O15457 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.1■□□□□ 0.81
MSH4O15457 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.1■□□□□ 0.81
MSH4O15457 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH4O15457 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
MSH4O15457 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
MSH4O15457 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
MSH4O15457 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MSH4O15457 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.09■□□□□ 0.81
MSH4O15457 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
MSH4O15457 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
MSH4O15457 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
MSH4O15457 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.09■□□□□ 0.81
MSH4O15457 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms