Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXN3O00409 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.22■□□□□ 0.67
FOXN3O00409 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 SPDYE13P-201ENST00000445314 798 ntBASIC19.22■□□□□ 0.67
FOXN3O00409 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.22■□□□□ 0.67
FOXN3O00409 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 LINC01311-201ENST00000565162 1445 ntBASIC19.22■□□□□ 0.67
FOXN3O00409 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXN3O00409 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXN3O00409 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXN3O00409 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 KRT8P47-201ENST00000604727 1398 ntBASIC19.21■□□□□ 0.67
FOXN3O00409 AC009949.1-201ENST00000623048 1830 ntBASIC19.21■□□□□ 0.67
FOXN3O00409 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
FOXN3O00409 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXN3O00409 AC092647.4-201ENST00000457211 535 ntBASIC19.21■□□□□ 0.67
FOXN3O00409 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
FOXN3O00409 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXN3O00409 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXN3O00409 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXN3O00409 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXN3O00409 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.21■□□□□ 0.67
FOXN3O00409 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXN3O00409 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 PP12613-201ENST00000424958 2230 ntBASIC19.21■□□□□ 0.67
FOXN3O00409 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
FOXN3O00409 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXN3O00409 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
FOXN3O00409 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXN3O00409 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXN3O00409 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
FOXN3O00409 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 TSPY12P-201ENST00000421279 868 ntBASIC19.2■□□□□ 0.66
FOXN3O00409 DUX4L26-201ENST00000489078 1255 ntBASIC19.2■□□□□ 0.66
FOXN3O00409 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.2■□□□□ 0.66
FOXN3O00409 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 RNF126P1-202ENST00000569893 925 ntBASIC19.2■□□□□ 0.66
FOXN3O00409 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.2■□□□□ 0.66
FOXN3O00409 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.2■□□□□ 0.66
FOXN3O00409 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.2■□□□□ 0.66
FOXN3O00409 AC009154.2-201ENST00000621177 724 ntBASIC19.2■□□□□ 0.66
FOXN3O00409 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.2■□□□□ 0.66
FOXN3O00409 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
FOXN3O00409 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
FOXN3O00409 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
FOXN3O00409 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.2■□□□□ 0.66
FOXN3O00409 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXN3O00409 AL353692.3-201ENST00000407031 1396 ntBASIC19.19■□□□□ 0.66
FOXN3O00409 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXN3O00409 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXN3O00409 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
FOXN3O00409 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 AC022616.7-201ENST00000525383 220 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms