Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 AC055876.3-201ENST00000431496 288 ntBASIC17.65■□□□□ 0.42
VPS13AQ96RL7 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 AC138649.4-201ENST00000612222 287 ntBASIC17.65■□□□□ 0.42
VPS13AQ96RL7 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 AC141586.3-201ENST00000562166 1838 ntBASIC17.65■□□□□ 0.42
VPS13AQ96RL7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 ARSEP1-201ENST00000420443 635 ntBASIC17.65■□□□□ 0.42
VPS13AQ96RL7 ACTG1P14-201ENST00000446382 1122 ntBASIC17.65■□□□□ 0.42
VPS13AQ96RL7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS13AQ96RL7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VPS13AQ96RL7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 ELK2BP-201ENST00000415014 1224 ntBASIC17.64■□□□□ 0.41
VPS13AQ96RL7 FAM207CP-201ENST00000443486 507 ntBASIC17.64■□□□□ 0.41
VPS13AQ96RL7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 AC004706.3-202ENST00000621574 984 ntBASIC17.64■□□□□ 0.41
VPS13AQ96RL7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 IGHV3-65-201ENST00000523210 341 ntBASIC17.64■□□□□ 0.41
VPS13AQ96RL7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13AQ96RL7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 NME2P1-201ENST00000426182 414 ntBASIC17.63■□□□□ 0.41
VPS13AQ96RL7 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 AL359881.2-201ENST00000602973 570 ntBASIC17.63■□□□□ 0.41
VPS13AQ96RL7 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 FAM58DP-201ENST00000428076 619 ntBASIC17.63■□□□□ 0.41
VPS13AQ96RL7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS13AQ96RL7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 BCAR1-209ENST00000546196 1340 ntBASIC17.62■□□□□ 0.41
VPS13AQ96RL7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms