Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TPM1P09493 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TPM1P09493 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.83■□□□□ 0.76
TPM1P09493 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TPM1P09493 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TPM1P09493 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.82■□□□□ 0.76
TPM1P09493 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.82■□□□□ 0.76
TPM1P09493 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TPM1P09493 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TPM1P09493 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 AC092666.2-201ENST00000613287 246 ntBASIC19.82■□□□□ 0.76
TPM1P09493 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TPM1P09493 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
TPM1P09493 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
TPM1P09493 AC036111.1-201ENST00000533973 1582 ntBASIC19.82■□□□□ 0.76
TPM1P09493 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.82■□□□□ 0.76
TPM1P09493 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TPM1P09493 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.82■□□□□ 0.76
TPM1P09493 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.82■□□□□ 0.76
TPM1P09493 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.81■□□□□ 0.76
TPM1P09493 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.81■□□□□ 0.76
TPM1P09493 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.81■□□□□ 0.76
TPM1P09493 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TPM1P09493 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.81■□□□□ 0.76
TPM1P09493 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.81■□□□□ 0.76
TPM1P09493 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TPM1P09493 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.81■□□□□ 0.76
TPM1P09493 KRT8P7-201ENST00000533003 1432 ntBASIC19.81■□□□□ 0.76
TPM1P09493 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
TPM1P09493 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TPM1P09493 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.81■□□□□ 0.76
TPM1P09493 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.8■□□□□ 0.76
TPM1P09493 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 HOXB1-202ENST00000577092 1414 ntBASIC19.8■□□□□ 0.76
TPM1P09493 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.8■□□□□ 0.76
TPM1P09493 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.8■□□□□ 0.76
TPM1P09493 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
TPM1P09493 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TPM1P09493 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.8■□□□□ 0.76
TPM1P09493 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.8■□□□□ 0.76
TPM1P09493 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TPM1P09493 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.79■□□□□ 0.76
TPM1P09493 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TPM1P09493 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.79■□□□□ 0.76
TPM1P09493 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TPM1P09493 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TPM1P09493 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TPM1P09493 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.79■□□□□ 0.76
TPM1P09493 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TPM1P09493 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TPM1P09493 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TPM1P09493 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.79■□□□□ 0.76
TPM1P09493 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TPM1P09493 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.79■□□□□ 0.76
TPM1P09493 MESTP1-201ENST00000404287 994 ntBASIC19.79■□□□□ 0.76
TPM1P09493 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.79■□□□□ 0.76
TPM1P09493 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.79■□□□□ 0.76
TPM1P09493 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.79■□□□□ 0.76
TPM1P09493 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms