Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH4O15457 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.16■□□□□ 0.82
MSH4O15457 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
MSH4O15457 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH4O15457 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
MSH4O15457 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
MSH4O15457 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 RCN1P2-201ENST00000398357 915 ntBASIC20.15■□□□□ 0.82
MSH4O15457 NUS1P2-201ENST00000417358 873 ntBASIC20.15■□□□□ 0.82
MSH4O15457 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH4O15457 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.15■□□□□ 0.82
MSH4O15457 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH4O15457 AC009533.2-201ENST00000543664 586 ntBASIC20.15■□□□□ 0.82
MSH4O15457 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.15■□□□□ 0.82
MSH4O15457 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH4O15457 AL121772.3-201ENST00000610840 674 ntBASIC20.15■□□□□ 0.82
MSH4O15457 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
MSH4O15457 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.15■□□□□ 0.82
MSH4O15457 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH4O15457 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH4O15457 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
MSH4O15457 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
MSH4O15457 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH4O15457 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH4O15457 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH4O15457 AC010460.3-201ENST00000511359 1579 ntBASIC20.14■□□□□ 0.81
MSH4O15457 KRT18P55-202ENST00000578578 1546 ntBASIC20.14■□□□□ 0.81
MSH4O15457 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH4O15457 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH4O15457 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH4O15457 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.14■□□□□ 0.81
MSH4O15457 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH4O15457 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 AC091304.2-201ENST00000564639 760 ntBASIC20.14■□□□□ 0.81
MSH4O15457 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH4O15457 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH4O15457 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
MSH4O15457 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH4O15457 AC114341.1-201ENST00000618070 349 ntBASIC20.14■□□□□ 0.81
MSH4O15457 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.14■□□□□ 0.81
MSH4O15457 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH4O15457 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH4O15457 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.13■□□□□ 0.81
MSH4O15457 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
MSH4O15457 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.13■□□□□ 0.81
MSH4O15457 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
MSH4O15457 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
MSH4O15457 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MSH4O15457 AC007967.3-201ENST00000434308 558 ntBASIC20.13■□□□□ 0.81
MSH4O15457 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.13■□□□□ 0.81
MSH4O15457 MIR5100-201ENST00000579544 119 ntBASIC20.13■□□□□ 0.81
MSH4O15457 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
MSH4O15457 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 AC011467.2-201ENST00000598425 242 ntBASIC20.13■□□□□ 0.81
MSH4O15457 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.13■□□□□ 0.81
MSH4O15457 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
MSH4O15457 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSH4O15457 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.13■□□□□ 0.81
MSH4O15457 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.12■□□□□ 0.81
MSH4O15457 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.12■□□□□ 0.81
MSH4O15457 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.12■□□□□ 0.81
MSH4O15457 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms