Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 AC090164.3-201ENST00000610780 2143 ntBASIC20.29■□□□□ 0.84
COL20A1Q9P218 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 AP000867.4-201ENST00000641616 219 ntBASIC20.29■□□□□ 0.84
COL20A1Q9P218 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 AC243591.1-201ENST00000452967 1364 ntBASIC20.29■□□□□ 0.84
COL20A1Q9P218 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL20A1Q9P218 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.29■□□□□ 0.84
COL20A1Q9P218 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 AF186996.4-201ENST00000467186 377 ntBASIC20.28■□□□□ 0.84
COL20A1Q9P218 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL20A1Q9P218 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL20A1Q9P218 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.27■□□□□ 0.84
COL20A1Q9P218 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
COL20A1Q9P218 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL20A1Q9P218 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.27■□□□□ 0.84
COL20A1Q9P218 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 AL590627.1-203ENST00000421194 1026 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 SLC25A1P1-201ENST00000528351 927 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 AL671883.3-201ENST00000603274 991 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 AC064862.7-201ENST00000604520 867 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 AC120114.3-201ENST00000611923 658 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.27■□□□□ 0.84
COL20A1Q9P218 BX640515.1-201ENST00000617215 977 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 FAM215A-202ENST00000632077 792 ntBASIC20.27■□□□□ 0.84
COL20A1Q9P218 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL20A1Q9P218 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
COL20A1Q9P218 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.27■□□□□ 0.83
COL20A1Q9P218 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
COL20A1Q9P218 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
COL20A1Q9P218 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL20A1Q9P218 AP000997.3-201ENST00000623333 2250 ntBASIC20.27■□□□□ 0.83
COL20A1Q9P218 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
COL20A1Q9P218 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.26■□□□□ 0.83
COL20A1Q9P218 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.26■□□□□ 0.83
COL20A1Q9P218 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL20A1Q9P218 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms